Simon Daniel Robinson1,2, Barbara Dymerska1,2, Wolfgang Bogner1,2, Markus Barth3, Zaric Olgica1,2, Sigrun Goluch1,4,5, Günther Grabner1,2, Xeni Deligianni6,7, Oliver Bieri6,7, and Siegfried Trattnig1,2
1High Field Magnetic Resonance Centre, Medical University of Vienna, Vienna, Austria, 2Department of Biomedical Imaging and Image-guided Therapy, Medical University of Vienna, Vienna, Austria, 3Centre for Advanced Imaging, The University of Queensland, Brisbane, Australia, 4Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria, 5Division of Endocrinology and Metabolism, Department of Internal Medicine III, Medical University of Vienna, Vienna, Austria, 6Department of Radiology, Division of Radiological Physics, University of Basel Hospital, Basel, Switzerland, 7Department of Biomedical Engineering, University of Basel, Basel, Switzerland
Synopsis
A new method for combining phase images from
multi-channel radio-frequency coils in the absence of a volume reference coil is presented and tested with calf, breast and head coils at 7 Tesla. This approach,
called COMbining Phased array data using Offsets from a Short Echo-time
Reference, or COMPOSER, is shown to yield phase matching between channels which
is better than a rival, widely adopted reference-free method (MCPC-3D) and comparable
with the reference-based Roemer method. COMPOSER can be used with all coil
arrays, including the next generation of PTx coils where the transmit array may
not be engineered to receive signal.BACKGROUND and PURPOSE:
Phase imaging benefits from strong susceptibility effects at very high field and the high SNR afforded by multi-channel coils. Combining the information from coils is not trivial, however, as the phase that originates in local field effects (the source of interesting contrast) is modified by the sensitivity profile of each coil. This has historically been addressed by referencing individual coil sensitivities to that of a volume coil – the Roemer/SENSE method1 - but an alternative approach is required for ultra-high field systems in which no such coil is available. A method has recently been proposed - COMbining Phased array data using Offsets from a Short Echo-time Reference, or COMPOSER2 – which approximates the phase measured in a reference scan with a short echo time to the phase of the receiver sensitivity and other phase effects present at TE=0. In this study we assess the effectiveness of COMPOSER in phase imaging with calf and breast coils in which the local transmit coil is not capable of receiving signal (i.e. where the Roemer approach cannot be applied) and quantify its performance with respect to another reference-coil-free method, MCPC-3D, and the Roemer method in the brain.
METHODS:
Measurements of 8 healthy subjects were made
with a 7 Tesla MR whole body Siemens Magnetom scanner. High resolution T2*-weighted
gradient-echo data of the brains of six male subjects were acquired with a 32
channel 1H head coil (Nova Medical) (0.3x0.3x1.2
mm3, TE/TR = 15/28 ms, TA=12 mins), of the calf in one female
subject with a two-channel 1H coil4 (0.55×0.55×2.0
mm3, TE/TR = 10/15 ms, TA=101 secs) and of the breasts of one
female subject with a four-channel dual-tuned 31P/1H coil (Stark Contrast) (1.6×1.6×1.3
mm3, TE/TR = 3/7 ms, TA = 102 secs). The short echo reference (SER) data
for COMPOSER were acquired with a 3D variable TE (vTE) sequence5 (2x2x4
mm3, vTE/TR = 0.8/5 ms, TA = 11 s). In the brain, dual-echo
gradient-echo scans with 2x2x3 mm3 resolution were also acquired for the
MCPC-3D method (TE/TR = (5, 9)/606 ms), and with both the birdcage transceive
coil (AC) and the receive array (VC) for the Roemer method (TE/TR =5/606 ms).
ANALYSIS:
The real and imaginary data from the
SER scan were coregistered to the high resolution scan with FSL’s FLIRT6. A combined phase image was
calculated from the single-channel magnitude (Mj) and phase
images (θj) from each
of the j coils of the high resolution
data using
$$\theta_{COMPOSER}=\angle\sum_jM_j\cdot e^{-(\theta_j-\theta_{SER,j})}$$
where $$$\angle$$$ is the angle and θSER,j the phase of the SER scan in the
space of Mj and θj. A
modified Roemer reconstruction (with correction of phase only) was carried out according
to
$$\theta_{Roemer\_mod}=\angle\sum_jM_j\cdot e^{-(\theta_j-(\theta_{VC,j}-\theta_{AC}))}$$
where (θVC,j-θAC) is the phase correction, which was
complex-smoothed and likewise in the space of Mj and θj.
The
MCPC-3D-II reconstruction was carried out according to Ref. 3.
The quality of phase matching in
each voxel was assessed via the metric ‘Q’, where θcor,j is the corrected phase in the
exponent in each method;
$$Q=100\times\frac{abs(\sum_jM_j\cdot e^{-\theta_{cor,j}})}{\sum_jM_j}$$
which approaches 100% for perfect matching.
RESULTS:
The absolute value of the complex
sum (‘Magnitude’) and Q values were low for No Correction (Figure 1, top two
rows) (median Q over all subjects = 19.0%)
and
close to 100% for the reference Roemer method (median Q=99.2%). Magnitude and Q values were generally high with MCPC-3D-II
(median Q=96.9 %), although errors
in unwrapping single-channel phase values led to isolated low values (Figure 1,
arrows 1-3). Phase matching with COMPOSER was similar to that with Roemer, with
a median Q value of 98.9%. These observations were confirmed by the histogram
analysis over all voxels and subjects in Figure 2. COMPOSER was similarly
effective in the calf (Figure 3) and breast (Figure 4), yielding near-perfect phase matching throughout the image and artefact-free combined phase images which could be unwrapped.
DISCUSSION AND CONCLUSION:
COMPOSER is a fast, robust method
for the phase-sensitive combination of data from coil arrays. It requires no
reference volume coil, making it feasible for use with all coil arrays,
including PTx coils and surface arrays where the transmit part may not be
engineered to receive signal. COMPOSER needs no phase unwrapping and provides
phase matching which is comparable to the Roemer method and superior to that
with the rival reference-coil-free approach tested.
Acknowledgements
This study was funded by the Austrian Science
Fund (KLI 264).References
1. Roemer
PB, Edelstein WA, Hayes CE, Souza SP, Mueller OM. The NMR phased array. Magn
Reson Med 1990;16:192-225.
2. Robinson
SD, Bogner W, Dymerska B, Cardoso P, Grabner G, Deligianni X, Bieri O, Trattnig
S. COMbining Phased array data using Offsets from a Short Echo-time Reference
scan (COMPOSER). Proceedings of the Twenty-forth Annual Meeting of the ISMRM,
Toronto 2015:#3308.
3. Robinson
S, Grabner G, Witoszynskyj S, Trattnig S. Combining phase images from
multi-channel RF coils using 3D phase offset maps derived from a dual-echo
scan. Magnetic Resonance in Medicine 2011;65:1638-1648.
4. Goluch
S, Kuehne A, Meyerspeer M, Kriegl R, Schmid AI, Fiedler GB, Herrmann T, Mallow
J, Hong SM, Cho ZH, Bernarding J, Moser E, Laistler E. A form-fitted three
channel (31) P, two channel (1) H transceiver coil array for calf muscle
studies at 7 T. Magn Reson Med 2015;73:2376-2389.
5. Deligianni
X, Bar P, Scheffler K, Trattnig S, Bieri O. High-Resolution Fourier-Encoded
Sub-Millisecond Echo Time Musculoskeletal Imaging at 3 Tesla and 7 Tesla.
Magnetic Resonance in Medicine 2013;70:1434-1439.
6. Jenkinson
M, Bannister P, Brady M, Smith S. Improved optimization for the robust and
accurate linear registration and motion correction of brain images. NeuroImage
2002;17:825-841.