Synopsis
Sophisticated Harmonic Artifact Reduction
for Phase data (SHARP) is a method widely used for removal of background
fields, which is one of the steps of Quantitative susceptibility mapping (QSM).
In this work we analyzed SHARP using different radii between 1 and 15mm, with
varying regularization parameters in mm-1, determined optimum values
and showed two cases that can arise due to wrong interpretation of the original
parameters. A direct conversion of the old-parameters-scheme to the new one is
presented. Best and extreme cases for parameters are demonstrated for simulated
models and an in-vivo case, and the effects on images are discussed.Introduction
Sophisticated Harmonic Artifact Reduction for Phase data (SHARP)
1 has been widely used for background-field elimination
in quantitative susceptibility mapping (QSM). A recent simulation study
2 suggested usage of a robust cut-off spatial frequency
(in mm
-1) as an adaptation of the original imaging- and
processing-parameter-dependent TSVD regularization. In the current study we
evaluate optimal settings (radius of the spherical kernel and cut-off frequencies)
for this improved SHARP implementation and illustrate a scheme for direct conversion
of the common TSVD threshold to the new parameters. We also illustrate effects
of incorrect parameter choices in simulations and
in-vivo.
Methods:
Numerical model: Detailed digital
numerical anatomical brain models
2 were analyzed. The first model represented brain,
skull, torso, and air-tissue interfaces (
Fig.
1a-d), whereas the second was generated as a ground-truth reference by
immersing it in a medium of constant susceptibility (
Fig. 1e). SHARP with varying radius (V-SHARP
3) was applied with radii varying between 1 and
15 mm and with regularization thresholds between 0 and 0.05 mm
-1. To
analyze the impact of incomplete background removal on the susceptibility maps,
an LSQR based spatial domain algorithm
4 was used. B1-contributions were not simulated because
they can be eliminated from multi-echo data prior to QSM processing. The root
mean squared error (RMSE) was calculated with respect to the ground-truth phase
and susceptibility maps (
Fig. 1g), over
the whole brain and within a certain distance from the brain’s surface. To
understand how the TSVD parameters (for a given radius) translate into the
(universal) cut-off frequency parameter, the Fourier coefficients with
magnitudes equal to or below a TSVD threshold in a deconvolution kernel
corresponding to the given radius were analyzed, and the maximum spatial frequency
of these coefficients was selected as a cut-off value. Finally, susceptibility maps were calculated from the background corrected phase images using HEIDI
8.
In-vivo study: Volunteer
(male; 29 years, approved by the local ethics committee) data were acquired at 3T
with a dual-gradient echo sequence (ToF-SWI
5) (TE1=3.38ms, TE2=22ms,
TR=30ms, FA=20°, FOV 230mm×230mm×106mm, isotropic resolution of 0.6mm). Phase
images were reconstructed (Hammond et al.
6) and phase aliasing was resolved with a 3D best-path
algorithm
7.
B1-effect: The initial (B1)
phase offset was estimated
1 and V-SHARP was applied to the second echo with and
without prior subtraction of this contribution, to understand the effect of B1-phase
on the results (e.g. in single-echo data).
Results:
Figure 2
illustrates that the volume in the Fourier-domain nulled by TSVD strongly depends
on the radius of the spherical kernel. It also depends on the image resolution
in the spatial domain, when the kernel radius is expressed in voxels (as common
in the literature), which is illustrated in
Fig. 3.
Figure 4 shows
that TSVD threshold values correspond to cut-off frequencies between 0 and
0.015 mm
-1 for radii between 2 and 15 mm (increment of 1 mm),
allowing the comparison of studies carried out using the original TSVD method
with future studies using the universal regularization. Total RMSE values (over
the whole brain) of the background-corrected-phase and susceptibility maps are
given in color-coded maps in
Figure 5a.
Figure 1g shows simulation results
for QSM images and error maps, calculated with best parameters (R=9 mm,
τ=0.0074 mm
-1) for QSM (white-star in
Fig. 5a, bottom). The first four columns of
Fig. 5b show SHARP and QSM images for best cases. Since ground
truth phase and susceptibility distributions are unavailable in-vivo, only the background corrected
phase and the susceptibility maps are shown. The bottom row shows difference
images of the susceptibility maps. Results confirm the numerical simulations in
Fig. 5a, except that the
susceptibility distribution for τ=0 substantially deviates from the optimum τ=0.0074
mm
-1 (bottom), due to non-harmonic contributions of the B1-related
phase offset. The right-most column shows the results obtained with τ=0 when
the B1-phase contribution was subtracted from the input phase image.
Conclusion:
The TSVD threshold originally defined for SHARP depends on the kernel
radius, and, hence, on the image resolution. Here, we derived a scheme that
allows direct conversion between the conventional threshold and the more robust
spatial-frequency cut-off, which will enable comparisons of studies acquired
with either parameter. Hence, we highly recommend using the new scheme for
future analysis. We further assessed best and extreme parameters with simulated-brain-models
and in-vivo data, and showed that residual
background contributions may exist in data not corrected for B1-related
phase offsets (
Fig.5, τ=0). Thus,
care should be taken in such cases. Finally, the choice of a small threshold,
while causing incomplete background-field elimination as evident from the field
maps, did not significantly affect the susceptibility maps (
Fig.5, case τ=0).
Acknowledgements
No acknowledgement found.References
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