Mojtaba Safari1, Anahita Fathi Kazerooni1,2, Maryam Babaie3, Mahnaz Nabil4, Mahsa Rostamie1, Parvin Ghavami1, Morteza Saneie Taheri3, and Hamidreza Saligheh Rad1,2
1Quantitative MR Imaging and Spectroscopy Group (QMISG), Research Center for Molecular and Cellular Imaging (RCMCI), Tehran University of Medical Sciences, Tehran, Iran, 2Department of Medical Physics and Biomedical Engineering, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran, 3Radiology Department, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran, 4Department of Mathematics, Islamic Azad University, Qazvin Branch, Qazvin, Iran
Synopsis
Meningioma brain tumors constitute the majority of adult
primary brain tumors, in which the role of apparent diffusion coefficient (ADC)
is controversial. We hypothesize that analysis of the heterogeneity within a
tumorous ecological region can reveal biological tissue properties, which could
further assist decision making about the optimum patient-specific treatment
strategy. In the present work, we propose an automated computer-aided diagnosis
method for phenotyping meningioma brain tumors, based on features representing
spatial heterogeneity in ADC-maps, with classification accuracy of 85.1%. In conclusion, it is demonstrated that heterogeneity of
meningioma brain tumors can be a potential discriminating biomarker of tumor
malignancy.Purpose
Accurate phenotyping of meningioma brain tumors,
as the most dominant primary form of brain tumors, is crucial for
patient-specific surgical and treatment planning. There remains controversy
about the role of diffusion-weighted imaging (DWI) and the extracted apparent
diffusion coefficient (ADC)-map in characterization of meningioma brain tumors.
Some studies have reported significantly lower ADC values in malignant
meningiomas than benign cases¹, but these results were not confirmed by other
studies². We hypothesize that spatial analysis of heterogeneity within tumorous
area on ADC-maps, which represents the ecological environment created by tumor
population, could reveal various biological properties of the tumor, based on
water content and cellular density. This can further provide potential
biomarkers of tumor malignancy for clinical decision support.
Materials and Methods
We retrospectively examined 44 patients (36
women, 9 men; age range, 11-80 years; mean age, 52 years) who had undergone
biopsy or surgical resection of the tumor and histopathological diagnosis. All
examinations were performed on a 1.5T MR scanner (Siemens Avanto). The MRI protocol
consisted of axial 2D T1-weighted image acquired before and after injection of
contrast agent with TR/TE = 420/9 ms, slice thickness = 5.5 mm, flip angle = 90°,
field of view (FOV) = 240×240 mm2, matrix size = 256×256; and DW
imaging acquired using SE-EPI sequence with
TR/TE = 3300/109 ms, slice thickness = 5.5 mm, flip angle = 90°, No. of
averages = 4, FOV = 250×250 mm2; matrix size = 128×128, spacing
between slices = 7.15 mm, b-values= 50, 1000 s/mm². ADC-maps were directly
calculated from DW images on the MR console. The overall procedure consisted of
five main steps: (1) Co-registration: The ADC-maps were automatically co-registered
with their counterpart post-contrast T1-w (T1C) images through rigid
intra-subject registration using FSL software package (http://fsl.fmrib.ox.ac.uk/fsl/). (2) Mask Creation: The tumor border was
delineated by selecting regions of interest (ROIs) on T1C images, to create a
mask of tumor. (3) Feature Extraction: The tumor mask was overlaid on the ADC-maps to
investigate heterogeneity within the region. Several spatial features consisting
of (a) first-order histogram measures, (b) higher-order textural methods, including
gray-level co-occurrence matrix (GLCM) and run-length matrix (RLM) features,
and (c) Gabor features, were computed to explore their significance in
discrimination of tumor types and determine the most accurate features for
automated classification of meningioma brain tumors. (4) Feature Selection:
To decrement the feature space complexity, forward selection Akaike information
criterion (AIC) feature selection method was employed³. (5) Classification:
Support vector machine classifier with radial basis functions (SVM-RBF) was
employed for classification of benign and malignant tumor groups based on the
selected features.
Results and Conclusions
SVM-RBF classifier was trained on 30% of the
data (with 100 times random selection) for devising the best predictive model
of meningioma brain tumor malignancy and was tested for the accuracy on the
remaining 70% of the data in each of the 100 iterations. Cross-validation was
performed using leave-one-out method and the classification performance was
evaluated and reported in terms of sensitivity, specificity, and accuracy (Table
1). It was indicated that after feature selection by AIC-forward technique, the
selected features were majorly those of GLCM and RLM textural features, which
are representative of heterogeneity of the tumorous region. Fig. 1 shows the
classification accuracy attained with increasing number of retained features
for the proposed classification scheme. It can be inferred from the plot that
the fluctuations of accuracy are small and the method is not very sensitive to
the number of selected features; so, we can use small number of features to
reduce the computation time and complexity of classification without
significantly decreasing the accuracy. The feature selection method can eliminate
redundant features, reduce the noise and build groupings that are both robust
and accurate. In conclusion, it was shown that the heterogeneity of cellular
density and distribution within meningioma tumors on ADC-maps, could be
discriminating biomarker of tumor malignancy. This was indicated by inspecting
the feature selection strategy, where among all retained features, textural features
representing the spatial heterogeneity within a tumorous region were
predominantly present as you can see in Fig. 1. This implies that if efficient
features of tumor properties are extracted for differentiation of brain tumors,
high accuracy could be achieved with fewer number of features. In this study,
we thrived to develop an accurate computer-assisted diagnosis (CAD) method for
differential diagnosis of benign and malignant meningioma brain tumors from ADC-maps.
Acknowledgements
No acknowledgement found.References
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neuro-oncology 108.1 (2012):
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