Synopsis
Human
brain
tumour tissues from glioblastoma multiforme,
astrocytoma, meningioma,
oligodendroglioma and metastatic tumours
were analyzed
by metabolite-metabolite
correlation analysis
of HRMAS 1H NMR spectra from the eTumour database. The following
metabolites were quantified using a
modified LC-Model basis set: alanine (Ala), choline (Cho), creatine
(Cr), lactate
(Lac), glutamine (Gln), glutamate (Glu), glycine (Glyn), N-acetylaspartate
(NAA), phosphocholine (PCh), phosphocreatine
(PCr), taurine (tau), myo-inositol (Ino) and
various lipids/macromolecules. The
estimated metabolite
concentrations
from LCModel fittings were used in the investigation of
pairwise metabolite-metabolite correlations. Pairwise
metabolite-metabolite correlations can serve as an overview of
metabolism and
can be helpful in understanding the cellular metabolism.Purpose
Human brain tumour tissues from glioblastoma multiforme,
astrocytoma, meningioma, oligodendroglioma and metastatic tumours were analyzed
by metabolite-metabolite correlation analysis of HRMAS
1H NMR spectra from the
eTumour database. The following metabolites were quantified using a modified
LC-Model basis set: alanine (Ala), choline (Cho), creatine (Cr), lactate (Lac),
glutamine (Gln), glutamate (Glu), glycine (Glyn), N-acetylaspartate (NAA),
phosphocholine (PCh), phosphocreatine (PCr), taurine (tau), myo-inositol (Ino)
and various lipids/macromolecules. The estimated metabolite concentrations from
LCModel fittings were used in the investigation of pairwise metabolite-metabolite
correlations analysis (MMCA). Pairwise metabolite-metabolite correlations can
serve as an overview of metabolism and can be helpful in understanding the
cellular metabolism.
Materials and Methods
All the HRMAS
1H NMR spectral data (water pre-saturated and
30ms T
2 filtered (CPMG) spectra) were downloaded from the e-Tumour database
1.The
eTumour project (2004 – 2009), funded by the EU (FP6-2002-LIFESCIHEALTH 503094),
involved 11 partners across Europe and Argentina. Spectra of tumour tissue
samples from verified cases of glioblastoma multiforme (GBM, n=154),
astrocytoma (ASTR, n=107), meningioma (MENI, n=75) , oligodendroglioma (ODG,
n=37 and brain metastasis (MET, n=34)
were analysed in this study. T
2 filtered (30ms in CPMG) HRMAS
1H NMR
spectra was used for PCA analysis. Spectra data was binned with 0.01ppm
interval between 0.5 ppm to 4.5 ppm (AMIX). SIMCA 14 (Umetrics) was used for
the PCA analysis. LCModel was used with a modified basis set to estimate the
metabolite concentrations from water suppressed-spectra; alanine, choline,
creatine, lactate, glutamine, glutamate, NAA, phosphocholine, taurine,
myo-inositol and lipids/macromolecules were quantifiable. The pairwise
metabolite-metabolite correlations were estimated by using a mixed model method
we recently developed
2 ; it also highlights correlations with high significance
at a cut-off value of P ≤ 0.001.
Results and Discussion
Many positive correlations were observed between the metabolites
belonging to the same biochemical pathway, and also between other metabolites in
different biochemical modules.There were many negative correlations between
lipids and the small-molecule metabolites involved in glycolysis, energy
metabolism, membrane metabolism and glutamine and glutamate metabolism (Fig 3).
A positive correlation between lactate and alanine was observed in all brain
tumour types except ODG. An upregulation of glycolysis (the Warburg effect) in
these tumours might be the cause for this observation.
The choline plus creatine level was previously found to be
negatively correlated with lipid levels in human brain tumours from
in vivo MRS
spectral data
3. This was attributed to dilution of metabolite levels due to a
heterogeneous mix of tissues, tumour grades, inflammation, hypoxia and
necrosis
3. Lipid and glutamine levels from
in vivo 1H MRS data had shown a
negative correlation in paediatric brain tumours
4. It has also been shown that
a positive correlation between signals at 1.3ppm and lipid pseudo-droplets
5
(and also lipids
6) in human brain tumour tissues consisting of no-necrosis, low
necrosis and high necrosis. The negative correlation between various
metabolites and lipids observed in this
ex vivo study shows further evidence of
these effects.
ODG tumours showed a
set of different correlations within the metabolites when compared to the
correlation data of other brain tumour types (table 1).The PCh to GPC ratio is
regarded a marker of malignancy
7. The plot of these metabolites showed a strong
positive correlation in MENI, whereas in GBM and ASTR there was no correlation
(table 1).
Conclusion
HRMAS
1H NMR spectral data of brain tumour tissues shows
numerous negative correlations between the signals of metabolites and of
lipids, perhaps because the tissue
samples include volumes with different tumour grades, inflammation, hypoxia and
necrosis. The positive correlation observed between lactate and alanine levels
in all brain tumours in this study (with an exception of ODG) might be due to
enhanced glycolysis. Detection of the percentage of necrosis in human brain
tumours is important for estimating grade of malignancy and also the response
to therapy. In future work we will therefore analyse the
in vivo 1H MRS spectra
in the eTumour database and compare them with the HRMAS
1H NMR metabolite data.
MMCA can be a helpful tool in understanding tumour metabolism.
Acknowledgements
This
work was supported by Cancer Research UK. We acknowledge our gratitude to all
the groups and members of the eTumour project and special thanks to Dr
Margarida Julià-Sapé, Institut de Biotecnologia i Biomedicina (IBB),
Universitat Autònoma de Barcelona, Spain for her help with accessing the
database.References
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