Pavithra Viswanath1, Russell Pieper2, and Sabrina M Ronen1
1Radiology, University of California San Francisco, San Francisco, CA, United States, 2Neurological Surgery, University of California San Francisco, San Francisco, CA, United States
Synopsis
Mutations in IDH1 are predominant in low-grade gliomas, and
inhibitors of the mutant IDH1 enzyme are under investigation as therapeutic
agents. Beyond 2-HG production, the IDH1 mutation also induces a broader
pattern of 1H-MRS-detectable metabolic alterations. In this study,
we investigated whether inhibiting mutant IDH1 using AGI-5198 reverses the
metabolic reprogramming observed in IDH1 mutant glioma cells. Our results
indicate that AGI-5198 treatment, while completely inhibiting 2-HG production,
nevertheless only partially reverses other metabolic alterations and results in
a moderate effect on clonogenicity of IDH1 mutant cells. Introduction
The majority of low-grade gliomas (70-90%) carry somatic
mutations in the gene for isocitrate dehydrogenase 1 (IDH1). Wild-type IDH1
catalyzes the oxidative decarboxylation of isocitrate to α-ketoglutarate (α-KG)
in the cytosol. Mutations in the gene result in the neomorphic ability to
convert α-KG to 2-hydroxyglutarate (2-HG). 2-HG, via competitive inhibition of
α-KG-dependent enzymes, has been shown to alter gene expression both via promoter
methylation and via HIF-1α-dependent signaling. Selective inhibitors of the
mutant IDH1 enzyme have been explored as therapeutic targets and one such
inhibitor, AGI-5198, has been shown to cause some delay in the growth of IDH
mutant gliomas
1. We recently showed that the IDH1 mutation leads to
1H-MRS-detectable
reduction in steady-state levels of glutamate, lactate and phosphocholine in
glioma cells
2. The goal of the current study was to use
1H-MRS
to determine whether treatment with AGI-5198 reverses the MRS-detectable
metabolic reprogramming induced by the IDH1 mutation in our glioma cells.
Methods
Immortalized normal human astrocytes (NHA) stably expressing
either IDH1 wild-type (NHAIDHwt) or mutant (NHAIDHmut) enzyme were generated
and maintained as previously described
2. Cells were routinely
cultured in Dulbecco’s Modified Eagle’s Medium supplemented with 10% fetal
bovine serum. The effect of AGI-5198 on cell proliferation was assayed by
measuring cell number following treatment with 10 μM AGI-5198 at various time
points. The effect of AGI-5198 on clonogenicity was measured using a soft agar
assay. To measure the effect of AGI-5198 on metabolite levels, cells (~10
7)
were treated with 10 μM AGI-5198 or DMSO (vehicle control) for 72 h and extracted
using the dual-phase extraction method as previously described
3.
1H-MRS
spectra (1D water pre-saturation ZGPR sequence, 90° pulse and 3 s relaxation
delay) were acquired using a 500 MHz Avance spectrometer (Bruker) equipped with
a Triple Resonance CryoProbe. Peak integrals were quantified using Mnova
(Mestrelab Research) and normalized to a trimethylsilyl propanoic acid
reference of known concentration and to cell number. All experiments were
performed in triplicate (n=3) unless otherwise mentioned and statistical
significance assessed using a two-tailed t-Test assuming unequal variance with
p<0.05 considered significant.
Results and Discussion
We used
1H-MRS to compare metabolite levels
between NHAIDHwt cells, and NHAIDHmut cells treated with 10 μM AGI-5198 or NHAIDHmut
controls (Fig 1). Quantification of metabolite levels indicated that AGI-5198
reversed some, but not all, of the metabolic alterations induced by the IDH1
mutation (Fig. 2). 2-HG levels dropped by 102.8±1.9% (p<0.05) indicating
that, as expected, AGI-5198 completely inhibited 2-HG production in NHAIDHmut
cells (Fig. 2). The steady state glutamate concentration increased
significantly (125.8±14.9%, p<0.05, Fig. 2) returning to the level observed
in NHAIDHwt cells (p>0.05 when comparing treated NHAIDHmut to control
NHAIDHwt). AGI-5198 treatment also increased phosphocholine (PC) levels in
NHAIDHmut cells (Fig. 2, 219.5±77.2%, p<0.05), restoring them to NHAIDHwt
levels (p>0.05 when comparing treated NHAIDHmut to control NHAIDHwt). However,
there was no change in intracellular lactate levels in NHAIDHmut cells following
AGI-5198 treatment, with lactate levels remaining significantly lower than
controls (Fig. 2, p>0.05 when comparing treated NHAIDHmut to control NHAIDHmut
and p<0.05 when compared to NHAIDHwt). We also tested the effect of AGI-5198
on cell proliferation and clonogenicity. While we did not observe an effect on
cell proliferation upon treatment with 10 μM AGI-5198 (Fig. 3A), we did see a
dose-dependent inhibition of clonogenicity in NHAIDHmut cells (Fig. 3B)
indicating that the IDH1 mutation is essential for malignant transformation,
but pointing to the limited impact of AGI-5198 on cell proliferation. In an
effort to understand our findings, we considered our recent observations that
the drop in glutamate in NHAIDHmut cells was due to a reduction in PDH activity
mediated by HIF-1α stabilization
4. We therefore, assessed PDH
activity in NHAIDHmut cells following AGI-5198 treatment. Our results indicated
that PDH activity was increased from 2.12x10
-9 OD/hr/cell in
NHAIDHmut cells to 7.06x10
-9 OD/hr/cell in AGI-5198-treated
NHAIDHmut cells, approaching the value of NHAIDHwt cells at 8.66x10
-9
OD/hr/cell (n=1). This observation suggests that inhibiting mutant IDH1 with
AGI-5198 reversed HIF-1α-mediated metabolic alterations, some of which affect
the clonogenic potential of our cells. However, other metabolic events are not
altered and are likely dependent on promoter methylation, which cannot be
readily reversed. Our findings highlight the complexity of the metabolic
reprogramming that occurs in mutant IDH tumors and the value of MRS in helping to
tease out this complexity.
Acknowledgements
NIH R01CA172845, NIH R01CA154915, NIH R21CA161545 and the
UCSF Brain Tumor Loglio Collective.References
1) Rohle et al., Science, 340: 626-630, 2013. 2) Izquierdo-Garcia
et al., PLOS ONE, 10:e0118781, 2015. 3) Ronen et al., Br J Cancer, 84: 691-696,
2001. 4) Izquierdo-Garcia et al., Cancer Research, 75:1-11, 2015.