Hossam El-Rewaidy1, El-Sayed H. Ibrahim2, and Ahmed Fahmy1
1Nile University, Cairo, Egypt, 2University of Michigan, Ann Arbor, MI, United States
Synopsis
Active-shape modeling (ASM) has potential for segmenting
the right ventricle (RV) from MRI images. Nevertheless, the complexity of the
RV shape does not allow for concisely capturing all possible shape variations.
In this work, we propose a new ASM framework in which the RV contour is split
into two simpler segments, septal and free-wall, whose shape variations are
independently modeled using two ASM models. Further, the RV contours are
aligned using the Bookstein coordinate-transformation. The results from a dataset
of 10 patients show that the proposed framework can efficiently model complex
RV shape variation with high accuracy in few iterations.BACKGROUND
Assessment of the right-ventricular (RV) structure and
function plays an important role in diagnosing and monitoring a number of
cardiovascular diseases. A necessary step for such analysis is the delineation
of the RV boundaries in the acquired images at different cardiac phases. Active-shape
models (ASM) showed to have potential for segmenting the RV from MRI images. Basically,
ASM’s detect the cardiac contour by minimizing an energy function that measures
the difference between the model and image data.
1,2 Nevertheless,
the large variability and complexity of the RV shape do not allow for concisely
capturing all possible shape variations among different patients and anatomical
cross-sections. Noticeably, the latter increases the number of iterations
required to converge to a proper solution and reduces the segmentation
accuracy. In this
work, we propose a modified ASM framework that can be used to efficiently
capture the RV shape variations.
METHODS
The developed technique includes two contributions. The
first contribution involves splitting each RV contour in two segments: septal
and free-wall (Figure 1(a)). In the training phase, this process is performed semi-automatically
by selecting the two RV insertion points into the septal wall. Each contour
segment is modeled separately, yielding a dual-ASM model. The two segments are then
merged together using a third-order B-Spline algorithm to obtain a smooth RV contour.
The second contribution of the developed technique involves using the Bookstein
algorithm,3 instead of the conventional Procrustes method4
used in conventional ASM, to align the generated contours. In the Bookstein
alignment method, a linear space of shape variations is used to represent the RV
shape (Figure 1(b)). Given a contour from the training dataset, the two RV insertion
points are manually selected and transformed into points (0,0) and (1,0) in the
Bookstein Coordinates. The remaining contour points are then transformed to
their corresponding points in the Bookstein Coordinates.
The developed technique has been tested
on a dataset from 10 patients imaged with cine MRI (total of 546 short-axis
images covering the whole cardiac cycle at the basal, mid-ventricular, and
apical locations). The dataset was randomly divided into two subsets: a training
set of 162 images and a testing set of 384 images. The ground truth was
defined by manually delineating the RV boundaries in the dataset. It is worth
noting that only one RV model was built from the three cross-sectional slices
(basal, mid-cavity and apical) of each patient, rather than building three
models, for improved segmentation efficiency. The principal component analysis technique
was applied to the aligned shapes to estimate the mean shape for every segment.
The first 8 and 15 modes of variation were selected to represent about 98% and
95% of the variance in the training set for the free-wall and septal segments,
respectively.
RESULTS
Table 1 shows the mean±SD errors between the contours
produced by the proposed dual-ASM and conventional ASM models with respect to the
manually delineated contours at different cross-sectional slices. As can be
seen in Table 1, the performance of the proposed ASM framework is better than
that of the conventional model. This is evident by the lower value of the Mean Absolute Distance (MAD) (which measures
the average absolute distance between each point on the estimated contour and
the corresponding point on the manually delineated contour) and Hausdorf
measure (which calculates the maximum distance between the two contours) and
higher value of the Dice index (which measures the similarity between the set
of points enclosed by the estimated contour and those enclosed by the ground
truth contour). Figure 2 shows the evolution of the ASM models in two patients from
the initial contour to the contours at iterations number 5 and 20. The figure
shows that the initial contour of the proposed ASM framework is much better
than that of the conventional ASM model. The figure also shows that the
proposed ASM framework converges after about 5 iterations, whereas the
conventional ASM model needs 15-20 iterations to correctly delineate the RV contour.
The average computation times for segmenting one slice using a personal
computer were 0.09 s and 0.17 s for the conventional and proposed ASM models,
respectively. Nevertheless, the parallelized nature of the problem renders this
difference insignificant.
CONCLUSION
The developed dual-ASM RV segmentation technique outperforms
the conventional ASM framework and can efficiently model complex RV shape
variation with more accuracy and in fewer iteration steps. Although the
proposed framework extracts only the RV endocardium, the RV epicardium can be
segmented through dilating the endocardium contour generated by the proposed
technique.
Acknowledgements
Funding from ITAC program, CFP #59, ITIDA Agency, Ministry of
Communication and Information Technology, Egypt.References
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