3D quantification of Vorticity, Helicity, Kinetic Energy and Energy loss in the Left Ventricle from 4D flow data using a finite element method
Julio Sotelo1,2,3, Jesús Urbina1,4, Bram Ruijsink5, David Nordsletten5, Israel Valverde6,7, Cristian Tejos1,2,8, Pablo Irarrazaval1,2,8, Marcelo Andia1,4,8, Daniel E Hurtado3,8, and Sergio Uribe1,4,8

1Biomedical Imaging Center, Pontificia Universidad Catolica de Chile, Santiago, Chile, 2Electrical Engineering Department, Pontificia Universidad Catolica de Chile, Santiago, Chile, 3Structural and Geotechnical Engineering Departement, Pontificia Universidad Catolica de Chile, Santiago, Chile, 4Radiology Department, School of Medicine, Pontificia Universidad Catolica de Chile, Santiago, Chile, 5Biomedical Engineering Department, King's College London, London, United Kingdom, 6Pediatric Cardiology Unit, Hospital Virgen del Rocio, Seville, Spain, 7Cardiovascular Pathology Unit, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocio, Seville, Spain, 8Biological and Medical Engineering Institute, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Catolica de Chile, Santiago, Chile

Synopsis

A quantitative characterization of vortex flow as turbulence and energy may offer a novel index of left ventricle (LV) dysfunction not available in conventional indexes. In this work we propose a novel method based on finite element interpolations to obtain a 3D quantitative maps of vorticity, helicity density, kinetic energy, and energy loss derived from 4D-flow data sets of the LV.
 This new method may offer a novel index of LV dysfunction, permitting identify the vortex ring and the magnitude of turbulence values not available in conventional indexes. In future work we pretend validate clinically our method with patient data.

Purpose:

The vortices that form during left ventricular (LV) filling are critical determinants of directed blood flow during ejection. One of the first works was developed by Won et al in 19951 providing the first characterization of vortex flows in the LV using 3D magnetic resonance velocity mapping, analyzing the size, angular velocity and kinetic energy, in normal subject. Also studies based on CFD and echocardiography reveal that the vortices in the LV have a specific geometry and anatomical locations and any alteration of these characteristics affect directly the efficiency and ventricle workload2-5. Recently, using magnetic resonance imaging the lambda2-method for the characterization of the vortices in the LV revealed another features as shape, location and orientation of LV vortex6. However, all these studies consist in a qualitative characterization of vortex flow in the LV. One notable exception is the work developed by Wong et al 20097, in this work they make use of 2D planes in short axis to calculate the vorticity using a finite-different formulation. Nevertheless, they omit all information out of plane that can be relevant to characterize any vortex flow. Additionally, is known that the finite-difference methods cannot handle the smooth and complex boundaries, inducing important errors when the geometry is simplified8. Therefore, a quantitative characterization of vortex flow as turbulence (vorticity and helicity) and energy (kinetic energy and energy loss) may offer a novel index of LV dysfunction. In this work we propose a novel method based on a finite-element method to obtain a 3D quantitative maps of vorticity, helicity density, kinetic energy, and energy loss in the LV derived from 4D-flow data sets.

Methods:

We developed a finite-element based computational framework to obtain the velocity gradient in three orthogonal direction generating continuous 3D maps of vorticity, helicity density, kinetic energy, and energy loss in the LV. The algorithm was based in a similar least-squares projection method previously published9. Using a MR Phillips Achieva 1.5T, we acquired 4D-Flow data of whole heart and M2D-SSFP of short axis cover the entire ventricle, from fourth healthy volunteers (one female and three male 31±3 years) without any know cardiac abnormality. A summary of the MR acquisition parameters is shown in the Table I. We integrated a chan-vese active contour algorithm, manual refinement of the segmentation and contour smoothing, in Matlab (The MathWorks, Natick, MA, USA) to generate a tridimensional segmentation of the M2D-SSFP images. This process allowed us to extract the geometry of LV for each cardiac phase. The tetrahedral finite element mesh was created from the M2D-SSFP segmentation using the iso2mesh library for Matlab (Figure 1). Using the transformation matrix generated with the DICOM header information, we aligned both data sets including the tetrahedral mesh in reference to the volunteer position. Thereafter, we were able to transfer each velocity value from 4D-Flow images to each node of the tetrahedral mesh for each cardiac phase (Figure 2). The finite-element analysis and visualization was developed in Python and Paraview software (Kitware Inc., NY, USA) respectively.

Results and Discussion:

Result of LV end systolic volume, end diastolic volume, stroke volume, cardiac output, ejection fraction and cardiac frequency for each volunteer were: 40/73/61/71 ml, 116/157/140/180 ml, 76/84/79/109 ml, 4.3/4.5/5.2/4.9 L/min, 65/54/56/61% and 57/54/66/45 bpm for volunteer 1/2/3/4 respectively. Ventricular volume characteristics are normal for all volunteers. In figure 3 we show the result of 3D vorticity and helicity density maps in a middle systolic and diastolic phases, for the LV of volunteer Nº1. In the same figure we also show the ranges of vorticity and helicity density for all volunteers. In figure 3 we observe the vortex rings around the mitral valve and aortic valve, in both systole and diastolic phases, showing an increment of vorticity and helicity values in the diastolic phase. In figure 4 we show the kinetic energy and energy loss for the same cardiac phases and volunteer showed in figure 3, the range for these parameters are shown in the bottom part of the figure. There was a greater energy loss in diastole compared to systole, probably given by the turbulent flows presented in this part of the cardiac cycle. Additionally, higher values of kinetic energy are visualized in the systolic phase.

Conclusion:

We have proposed a
novel method that allowed us to obtain 3D maps of vorticity, helicity density, energy loss and kinetic energy in the left ventricle from 4D-flow MRI data using a finite-elements method. This new approach offers novel index for the assessment of LV dysfunction. We are currently working on validating this method in more volunteers and patients.

Acknowledgements

Anillo ACT 1416 and FONDEF #15I10284. JS thanks to CONICYT and Ministry of Education of Chile, with his higher education program, for scholarship for doctoral studies.

References

1.- Kim WY, Walker PG, Pedersen EM, et al. Left ventricular blood flow patterns in normal subjects: a quantitative analysis by three-dimensional magnetic resonance velocity mapping. J Am Coll Cardiol. 1995;26(1):224-38.

2.- Pedrizzetti G, Domenichini F. Nature optimizes the swirling flow in the human left ventricle. Phys Rev Lett. 2005;95(10):108101.

3.- Hong GR, Pedrizzetti G, Tonti G, et al. Characterization and quantification of vortex flow in the human left ventricle by contrast echocardiography using vector particle image velocimetry. JACC Cardiovasc Imaging. 2008;1(6):705-17

4.- Belohlavek M. Vortex formation time: an emerging echocardiographic index of left ventricular filling efficiency?. Eur Heart J Cardiovasc Imaging. 2012;13(5):367-9

5.- Martínez-Legazpi P, Bermejo J, Benito Y, et al. Contribution of the diastolic vortex ring to left ventricular filling. J Am Coll Cardiol. 2014;64(16):1711-21.

6.- Elbaz MS, Calkoen EE, Westenberg JJ, et al. Vortex flow during early and late left ventricular filling in normal subjects: quantitative characterization using retrospectively-gated 4D flow cardiovascular magnetic resonance and three-dimensional vortex core analysis. J Cardiovasc Magn Reson. 2014;16:78.

7.- Wong KK1, Kelso RM, Worthley SG, et al. Cardiac flow analysis applied to phase contrast magnetic resonance imaging of the heart. Ann Biomed Eng. 2009;37(8):1495-515.

8.- Zienkiewicz OC, Taylor RL, Zhu JZ. The finite element method: Its basis and fundamentals, sixth ed. London: Butterworth-Heinemann. 2005.

9.- Sotelo J, Urbina J, Valverde I, et al. 3D Quantification of Vorticity and Helicity from 4D Flow Data Using Finite Element Interpolations. Proc 23rd Annual Meeting ISMRM, 2015.

Figures

Table I. M2D SSFP and 4D Flow MRI parameters.

Figure 1. Mesh generation process. First we segmented each slice of M2D SSFP images for each cardiac phase. An isosurface and a refinement of the mesh is applied in order to generate element with one-fourth part of the voxel volume. Finally, the tetrahedral mesh was created for each cardiac phase.

Figure 2. Using the transformation matrix, we align each data set, including the tetrahedral mesh, using the volunteer position as reference. Then each velocity value is transfered from 4D flow images to each node of the tetrahedral mesh previously created, for each cardiac phase.

Figure 3. 3D maps of velocity, helicity and vorticity, for one systolic and one diastolic cardiac phase, of the volunteer 1. Additionally, in the bottom part of the figure we show the ranges between all cardiac phases for each volunteer data. For visualization purposes, we adjust the color bar range.

Figure 4. 3D maps of velocity, kinetic-energy and energy-loss, for one systolic and one diastolic cardiac phase, of the volunteer 1. Additionally, in the bottom part of the figure we show the ranges between all cardiac phases for each volunteer data. For visualization purposes, we adjust the color bar range.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
2589