Julio Garcia1, Alex J. Barker1, Susanne Schnell1, Jeremy D. Collins1, James C. Carr1, and Michael Markl1,2
1Radiology, Northwestern University, Chicago, IL, United States, 2Biomedical Engineering, Northwestern University, Evanston, IL, United States
Synopsis
The processing of time-resolved
3D phase-contrast MRI with three-directional velocity encoding (4D flow MRI) cases
can be highly time consuming given the large multi-dimensional datasets
(3D+time of the cardiac cycle+3-directional blood flow velocities). However, the fully automated processing of
cases in large databases is still challenging. The purpose of this
study was to introduce an automated workflow allowing the unattended retrospective
processing of aortic 4D flow MRI data from a large database of subjects.Purpose:
The processing of time-resolved
3D phase-contrast MRI with three-directional velocity encoding (4D flow MRI) cases
can be highly time consuming given the large multi-dimensional datasets
(3D+time of the cardiac cycle+3-directional blood flow velocities). Recent
studies have shown that the analysis of aortic 4D flow MRI data can be
performed using automated and semi-automated analysis for the extraction of
aortic diameters
1, flow quantification
1,2,3, and flow
pattern visualization
2,3. However, the fully automated processing of
cases in large databases is still challenging. Therefore, the purpose of this
study was to introduce an automated workflow allowing the unattended retrospective
processing of aortic 4D flow MRI data from a large database of subjects. The specific
aims were to: 1) measure maximal aortic diameter (AoD) and peak velocity (PV);
2) provide a quick visualization of 3D hemodynamics; and 3) provide an overview
of demographic data and measured parameters.
Methods:
Subjects were
identified via an IRB-approved retrospective chart review from a database of
healthy subjects and patients who underwent thoracic MRI including 4D flow MRI
of the aorta between 2012 and 2015. Inclusion criteria for unattended
processing included cases with: a) a complete 4D flow MRI acquisition; b) full
pre-processing (eddy-current correction, flow aliasing, calculation of 3D phase
contrast angiography [3D PC-MRA]) of 4D flow datasets
5; c) existing
3D segmentation of thoracic aorta (Mimics, Materialise, Leuven, Belgium)
obtained from 3D PC-MRA
1. A total of 782 subjects were included,
subdivided into the following groups: healthy control subjects (n=106),
patients with bicuspid aortic valve (BAV, n=375), and patients with tricuspid
aortic valve (TAV, n=301). All subjects underwent 4D flow MRI during free
breathing with adaptive respiratory navigator gating with full 3D coverage of
the thoracic aorta4 using 1.5T and 3T systems (Magnetom, Avanto,
Aera, or Skyra, Siemens, Germany). Unattended processing was implemented in
Matlab (The Mathworks, Natick, MA, USA) as schematically illustrated in figure
1. For each subject, the data analysis workflow included: i) the generation of
a velocity maximum intensity projection (MIP) using the 3D segmentation of the
thoracic aorta to mask the 4D flow MRI velocity field; ii) the creation of a
time-resolved velocity vector movie and depiction of the velocity vector field
at peak systole; iii) the automatic calculation of AoD using multiple analysis
planes along a volumetric centerline generated from the full 3D PC-MRA
segmentation
1; iv) the collection of 4D flow MRI scan parameters and
patient demographics from DICOM header. All MIPs, movies, and aortic
measurements were saved for future queries or for report generation. PV was automatically
obtained from the velocity MIPs and extracted downstream of the aortic valve.
Results:
Processing times varied
from 4-6 minutes/case. Collected 4D flow MRI acquisition parameters were as
follows: 1.5 T scan (n=656) used TE/TR=2.4–2.8/4.8–5.4
ms, flip angle α=7–15°, Venc=1.5 m/s, resolution=1.6-2.5×1.6-2.5×2.2-3.4
and a matrix=192–400×108–116; 3T scan (n=119) used TE/TR=2.3-2.6/4.8-5.1 ms,
flip angle α=7–15°, Venc=1.5-2.5 m/s, resolution=1.6-2.3×1.6-2.3×2.2-2.8
and a matrix=160-192×80-116. Scan acquisition parameters were incomplete in
n=10(1%) of cases. Height and weight were incomplete in n=259(33%) cases. Subject
demographics are summarized in Table 1. Examples of velocity MIPs and flow
vectors from each group are presented in figure 2. Based on data from the
entire cohort of 782 subjects, correlation analysis demonstrated relationships between
age and AoD (R=0.34, P<0.001), age and PV (R=0.03, P=0.414), and AoD and PV
(R=0.25, P<0.001). The BAV group showed the most significant correlations
among groups (Table 2). One-way ANOVA showed significant (P<0.001) group
differences for age, AoD and PV. Inter-group analysis, figure 3, showed that
TAV subjects were older than controls and BAV, AoD was larger in BAV and TAV
subjects, and PV was higher in BAV subjects.
Discussion:
This study demonstrated
that: 1) unattended processing of 4D flow MRI datasets in a database is feasible;
2) quick visualization of flow patterns was possible with the use of velocity
MIPs and vector flow screenshots; 3) group overview analysis can be performed
by querying pre-processed cases. It is important to notice that
pre-segmentation of the thoracic aorta was needed to generated an adequate
visualization of flow velocities and for the calculation of AoD. The automated
calculation of PV and flow measurements (net flow, mean flow, retrograde flow)
may also streamline the proposed workflow.
Conclusion:
The proposed workflow
allowed for the unattended processing of 4D flow MRI datasets, including the
measurement of basic parameters (AoD and PV) and flow visualization (velocity
MIPs and 3D flow vectors), in a large database. This represents an important
step towards the systematic analysis of 4D flow MRI datasets in large clinical
studies.
Acknowledgements
Grant support by NIH R01HL115828, 5K25HL119608-02
and AHA 14POST18350019.References
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