Virendra Kumar1, Tanmoy Bagui2, Rashmi Mukherjee2, Vertika Rai2, Pawan Kumar1, and Chandan Chakraborty2
1Department of NMR, All India Institute of Medical Sciences, New Delhi, India, 2School of Medical Science & Technology, Indian Institute of Technology Kharagpur, Kharagpur, India
Synopsis
Diabetic
retinopathy (DR), is a major cause of blindness, caused by prolonged diabetes.
However, this morbidity is largely preventable and treatable. The progression
of DR from prolonged diabetes involves complex metabolic de-regulations. 1H
NMR-based metabolomics of serum have potential to study dysregulation in
metabolites of DR patients. Results of the PCA and PLS-DA analysis revealed
metabolic differences in DR patients compared to healthy subjects. Using such a
study, we may observe the severity of disease based on metabolic fingerprints and
it may serve as a platform for screening of molecular targets for a more
efficient therapeutic intervention.Introduction
Diabetic retinopathy (DR), is a major cause of
blindness, caused by prolonged diabetes. However, this morbidity is largely
preventable and treatable. Therefore identification of early changes in DR is
important to help management of disease. The progression of DR from prolonged diabetes
involves complex metabolic de-regulations.
1H NMR-based metabolomics
is one of the promising technique to assess metabolic changes in bio-fluids. To
our knowledge this is the first
1H NMR metabolomics study of serum
in DR patients. The aim of the present study was to explore dysregulation in
metabolites expression for the differential serum metabolic profile of DR
patients using
1H NMR–based metabolomics analysis.
Methods
Venous blood samples from 6 DR patients with type 1
diabetes (diabetes duration, 12.2 ± 4.5 years; HbA1c, 8.4% ± 1.4%) and from 6
age-matched non-diabetic volunteers were collected. Samples were incubated at
room temperature for 45 min to allow clotting followed by centrifugation at
1500 × g for 10 min. 200μL of the supernatant (serum) were transferred into
sterile cryovials, lyophilized and stored at − 80°C until further use. For NMR
experiments, lyophilized serum samples were weighed and dissolved in D
2O.
600μL of sample was transferred to 5 mm NMR tubes. 1D spectra were acquired
using 700MHz Agilent Spectrometer. The parameters used for 1D NMR spectra using
CPMG sequence were: ns, 64; relax delay, 14; pulse angle, 90°;
reference, 0.5 mM TSP. NMR data were processed in MATLAB using NMRLab/MetaboLab
(1). Post-processing steps included scaling, alignment, exclusion of water
signal and TSP signal, binning at 0.006 ppm. Statistical analysis included principal
component analysis (PCA) and PLS- DA multivariate analysis using PLS toolbox in
MATLAB.
Results
Figure 1 shows the representative NMR spectrum
(expanded region 3.2 ppm to 3.9 ppm) obtained from controls (red) and diabetes
patients (blue). Principal component analysis (PCA) analysis showed as score plot
in Figure 2 depicts separation between two categories of samples. Serum samples
of DR patients showed a trend towards lower or negative values of PC1. To get
more detailed insight into the data, PLS-DA was also used. Figure 3 shows PLS-DA
revealing more clear separation between the two groups.
Discussion
1H NMR based metabolomics
analysis of serum samples provides an insight into the metabolic fingerprints
of DR. The results of the present study revealed a vital association of
metabolic dysfunction with DR. The PCA and PLS-DA analysis could distinguish
metabolic profiles of DR patients from healthy controls in spite of limited
number of samples. It should be noted that blood serum represents the effects
of metabolism contributions from different organs and metabolic processes of
body. The next step of the study would be to identify the different specific metabolites
and their pathways that are altered in DR compared to healthy controls. Using
such a study, we may observe the severity of disease on the basis of metabolic
fingerprints of serum. This, in turn, may serve as a platform not only for
future pathophysiological studies but also for the screening of molecular
targets for a more efficient therapeutic intervention of this disturbing
complication of diabetes.
Acknowledgements
No acknowledgement found.References
1. Günther UL, Ludwig C, Rüterjans H. NMRLAB - Advanced NMR Data Processing in Matlab.
J Magn Reson, 2000;145:201-208