Synopsis
Hyperpolarized 13C MR can provide unique
imaging assessments of metabolism and perfusion in various disease conditions in
vivo. High spatiotemporal resolution is needed to best characterize these processes. This project used a low rank plus sparse
reconstruction with the bSSFP acquisition to achieve high isotropic
resolution dynamic 3D imaging with multiple hyperpolarized substrates.Purpose
The development of new hyperpolarization (HP)
13C
methods has allowed unprecedented characterization of metabolism and perfusion
changes in various diseases processes using MRI
1,2. To
characterize these temporal processes, dynamic hyperpolarized
13C
imaging is desirable, although a trade-off between high temporal resolution and
high spatial resolution is typically required
3.
The bSSFP sequence offers the highest SNR per unit time and can be readily
combined with compressed sensing to achieve high spatial and temporal
resolution dynamic imaging
4. A
low rank plus sparse (L+S) reconstruction approach for undersampled data has
been previously demonstrated in
1H perfusion imaging
5,
whereby the low rank component describes the temporally and spatially
correlated background, and the sparse component describes the remaining dynamic signal changes, both of which are typically seen in hyperpolarized
13C
imaging. In this project, we utilized the L+S reconstruction to achieve 3D high
resolution (1.5-2 mm isotropic; 0.003-0.008 cm
3)
13C
images of [
13C,
15N
2]urea and [2-
13C]pyruvate
in vivo with 5 s temporal resolution.
Methods
Simulated reconstructions using
the L+S method (total variation along the time dimension for the sparse
component) were performed by retrospectively undersampling a previously acquired 3D high
resolution dataset that was transformed into a 4D dataset by adding signal dynamics based on
previously published
in vivo
hyperpolarized
13C studies
2. A different undersampling
variable-density pattern was used for each time point and structural similarity
index (SSIM) was used to assess the reconstruction. The
in vivo experiments were performed with a custom dynamic 3D bSSFP
pulse sequence in normal Sprague-Dawley rats. For each of the 13 time points
for [
13C,
15N
2]urea imaging, ~192/480 phase
encodes (80 x 40 x 12 matrix size) were acquired based on a simulated 60%
undersampling pattern chosen for initial studies. A 1.6 ms sinc pulse (no slice select gradients) with a
flip angle θ = 30°, after a θ = 15° preparatory pulse, was used with a TR/TE of
7.5/3.75 ms, leading to a scan time of 1.44 s per time point. A delay of 3.56 s
was used between time points, leading to a temporal resolution of 5 s, and a
total scan time of 65 s. [2-
13C]pyruvate imaging was acquired with similar pulse
and TR/TE parameters, but ~108/270 phase encodes (60 x 30 x 9 matrix size) were
acquired, leading to a scan time 810 ms per time point, and a 4.19 s delay to
achieve 5 s temporal resolution. Both compounds were imaged with a 12 x 6 x 1.8
cm
3 field of view, leading to 1.5 mm isotropic resolution for [
13C,
15N
2]urea
and 2 mm isotropic for [2-
13C]pyruvate. The
13C images of
[2-
13C]pyruvate and [
13C,
15N
2]urea
were each acquired independently starting at the beginning of injection (t = 0 s).
The experiments were conducted on a 3T GE MR scanner. DNP experiments used a HyperSense
polarizer, and 3 mL of 110 mM [
13C,
15N
2]urea and
80 mM [2-
13C]pyruvate was injected via tail vein catheters in two
different animals.
Results and Discussion
The L+S reconstruction of retrospectively
simulated data was in good agreement with the fully sampled data for various
acceleration factors, with the resulting SSIMs being above 0.9. Figure 1 shows
the L+S reconstructed and fully sampled images, as well as the SSIM map for a
representative dynamic slice, for the 60% undersampling pattern used in
in vivo studies. The resulting 3D dynamic images showed distribution of urea (Figure 2)
and pyruvate (Figure 3) within the kidneys, aorta, and heart, with the
resolution being high enough to visualize uptake in the renal cortex, medulla,
and pelvis. The figures show the full 3D view of each compound at 20 s after
start of injection, as well as the time course for a representative slice of
both urea and pyruvate, with the SNR being high enough to detect both compounds
in multiple time frames. The signal dynamics for each compound from the left
kidney are also shown. While the RF pulse was not spectrally selective, any signal from metabolites formed from [2-
13C]pyruvate can be considered relatively negligible compared to the signal level of [2-
13C]pyruvate
6.
Conclusion
The application of the L+S reconstruction to the
bSSFP sequence allowed for 3D dynamic high resolution (0.003-0.008 cm
3)
imaging of HP
13C substrates. This approach also provided high
temporal resolution and a large temporal window that showed in-flow and
out-flow of the substrates in different anatomical structures. The 1.5-2 mm
isotropic resolution achieved here is similar to that used for
1H
imaging and application of this approach can be extended to future studies of cancer
and other disease models, as well as ultimately for clinical imaging.
Acknowledgements
The authors would like to thank Dr. Jeremy
Gordon, Dr. Peng Cao, Mark Van Criekinge, and Lucas Carvajal for all their help and funding from the NIH (P41EB013598).References
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