Esha Baidya Kayal1, Devasenathipathy K2, Kedar Khare3, Jayendra Tiru Alampally2, Sameer Bakhshi4, Raju Sharma2, and Amit Mehndiratta1,5
1Centre for Biomedical Engineering, Indian Institute of Technology Delhi, New Delhi, India, 2Department of Radiology, All India Institute of Medical Sciences, New Delhi, India, 3Department of Physics, Indian Institute of Technology Delhi, New Delhi, India, 4BRA IRCH, All India Institute of Medical Sciences, New Delhi, India, 5Department of Biomedical Engineering, All India Institute of Medical Sciences, New Delhi, India
Synopsis
Quantitative analysis of IVIM effect revels both
diffusion and perfusion component of tissue. As widely used bi-exponential model
is not very reliable, we propose two penalty function: a) Total Variation and b)
Huber Penalty function with bi-exponential model for IVIM parametric analysis
of soft tissue tumours. Results show better
fit to IVIM dataset by our two methods compared to standard BE model and
freeware Osirix. IVIM analysis using Total Variation Reduction methodology
showed qualitatively and quantitatively better estimation of both perfusion and
diffusion component in soft tissue tumours. Purpose:
Diffusion-weighted
imaging (DWI) characterizes the random microscopic motion of molecules and
enables assessment of tissue microstructure. The fast attenuation of signal at low
b values (0–100 s/mm2) has been shown to capture the perfusion
information within the capillary network called Intra-voxel Incoherent Motion (IVIM)
[1]. Using quantitative analysis of IVIM effect, both diffusion and perfusion component
of tissue can be assessed separately; bi-exponential model has been widely used
for the same [2]. Perfusion information available with IVIM is not very
reliable for clinical interpretation. We implemented regularized parametric
estimation for IVIM using two penalty function: a) Total Variation and b) Huber
function with bi-exponential model in patients with Ewing sarcoma.
Methods:
IVIM dataset from four patients (M:F=3:1,
Age=25.3± 8.8 years), with Ewing
sarcoma were acquired under the Institutional Review Board approved protocol.
The acquisition were performed using 1.5T Philips Achieva MRI scanner with Spin
Echo Planar imaging (SP-EPI) sequence with TE=66msec,TR= 1782msec, 5mm slice
thickness and 144x144 matrix size. The DW images were acquired at 11 b-values
(0, 10, 20, 30, 40, 50, 80, 100, 200, 400, 800 s/mm2). For one
patient DWI images were acquired again after 2 cycles of chemotherapy. Thus in
total five IVIM datasets were processed. Apparent diffusion coefficient (ADC)
was estimated using mono-exponential fit for b≥ 200s/mm2. The IVIM datasets
were analysed using four methods: i) Bi-Exponential (BE) model, ii) BE model
with Total Variation (TV) penalty [3] (BE+TV), iii) BE model with Huber Penalty
function [4] (BE+HPF) and iv) freeware Osirix. Three analysis methods, BE,
BE+TV and BE+HPF, were implemented in an in-house built analysis toolbox
implemented in MATLAB. An iterative optimization was performed using a
nonlinear least square fitting algorithm along with the penalty functions.
Due to the nature of the data, the BE solution
using simple optimization as well as that using Osirix package, might be highly
noisy. In order to obtain physiologically meaningful solution we include
gradient based penalties such as Total Variations [3] and Huber function [4] in
our optimization model. Coefficient
of determination (R2) was calculated to measure
the goodness of fit for the four methods, using the in-vivo IVIM data and the best fitted signal with the model. R2
varies between 0 to1; values close to 0 being a poor and close to 1 a good
model fit.
Results:
Figure 1 shows the R2 values calculated
in-vivo using four methods. BE+TV and
BE+HPF both methods had the highest R2=0.9± 0.02. One
representative slice (b=800s/mm2) from a dataset is shown in Figure 2a
and Figgure 2b shows the mean fitted signals by four methods to the tumour ROI.
BE + TV and BE + HPF both outperformed other two methods in data fitting. Estimated
parametric maps for Diffusion coefficient (D), Perfusion coefficient (D*),
Perfusion fraction (f) for one representative patient are shown in Figure 3 BE+TV
and BE+HPF, both the methods produced better and clinically interpretable
images compared to other BE and Osirix freeware algorithm. Figure 4 shows the
ADC, D, D*, f image using BE+TV method for both baseline and follow-up (chemotherapy).
Both ADC and D in tumour demonstrated an increase in follow-up images. D*
showed no change whereas perfusion fraction (f), demonstrated an increase in
perfusion in tumour ROI after chemotherapy.
Conclusion:
IVIM analysis
using Total Variation and Huber Penalty function methods showed a better fit to the IVIM
dataset of Ewing sarcoma. Parametric maps (D, D* and f) estimated using BE+TV
and BE+TV had less image noise and were clinically interpretable as compared to
standard BE model or with freeware Osirix. IVIM analysis using Total Variation or
Huber Penalty function methodology showed qualitatively and quantitatively
better estimation of both perfusion and diffusion component in Ewing sarcoma. Addition
of optimization functions like Total Variation and Huber in the IVIM analysis
methodology help to reduces non-physiological spatial inhomogeneity, thus could
benefit analysis with clinically interpretable IVIM parameters. These methods could
be similarly applied for IVIM analysis of other type of tumours.
Acknowledgements
No acknowledgement found.References
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[4] Huber et al., Peter J,Annals of Statistics, 53 (1): 73–101,1964