Synopsis
Non-vanishing diffusion kurtosis
and time-dependent diffusion are both hallmarks of nongaussian diffusion in
biological tissues. Here we combine measurements of time-dependent DTI
parameters and time dependence of mean kurtosis using fast kurtosis imaging in
rat spinal cord. We observe substantial time dependence of all parameters in
both white and gray matter.Purpose
To demonstrate time
dependence of diffusivity and kurtosis parameters in gray and white matter of
rat spinal cord.
Introduction
The interaction of
water molecules with microstructural impediments in biological tissue leads to
time dependence of diffusion parameters, yet experimental evidence has been
inconclusive[1, 2]. Although time
dependencies were observed in q-space imaging[3, 4], studies
investigating time dependence of kurtosis parameters[5] in neural tissue are lacking, presumably due to time
consuming acquisitions. Nevertheless, the functional form of these time
dependencies is expected to bear significant microstructural information. Here
we demonstrate significant time dependence of DTI parameters in white and gray
matter of ex-vivo rat spinal cord, and, for the first time in neural tissue,
time dependence of mean kurtosis, using a recently proposed fast kurtosis
imaging protocol[6, 7].
Methods
Long-Evans rats, 14-16 week old, were perfused intracardially
using 4% PFA, and the cervical region of the spinal cord was isolated (n=3),
washed in PBS, aligned in a 5mm NMR tube, and scanned using an ultrahigh-field 16.4T
Bruker Aeon Ascend magnet (700MHz). To keep a constant echo time, a
Stimulated-Echo based Echo-Planar-Imaging DTI sequence was executed using 15 directions
in a single b=1.2 ms/μm2 shell, with isotropic in-plane resolution
of 34x34 μm2 and slice thickness of 900 μm, TR/TE = 4000/28.5 ms,
and the diffusion times (Δ) were varied between 7 and 150 ms. The 1-9-9 scheme[7] was executed using identical imaging parameters, and the 9 directions
in two b-value shells b=1.0 and 3.2 ms/μm2, with Δ between 4 and 130
ms. White matter ROIs were
selected in order of increasing axonal diameters as in refs. [8, 9], see Fig. 1, which
also shows 6 gray matter ROIs used.
Results
The time dependence of the parallel diffusivity $$$D_\parallel$$$
and perpendicular diffusivity $$$D_\perp$$$ are shown in Fig. 2. Within the
experimental uncertainty, $$$D_\parallel$$$ is decreasing roughly linearly with
time in all ROIs, whereas $$$D_\perp$$$ appears more nonlinear. Although there
is a tendency for areas with larger axons to have higher $$$D_\perp$$$, the
order of the curves reveals no clear-cut relation to the axonal radii, indicating that the diffusion coefficients are modulated also by
other factors, e.g. the extracellular space (such as packing). The long time
behavior suggests that the tortuosity regime is not reached in the parallel
direction, in contrast to the perpendicular direction, where tortuosities can
be estimated roughly by $$$D(t=0)/D(t\to \infty )$$$, using the first time
point for the numerator and the average of the last three for the denominator,
to yield 1.83, 1.77, 2.50, 1.98, 1.80, 1.67, and 1.92, for regions (A-G)
averaged over animals. Note that the estimation of these values
neglects the intra-axonal water fraction contribution to the diffusivity, argued
to be subdominant in ref. [10]. Fractional anisotropy is generally lower in the ROIs with larger diameters,
and increases strongly with time initially with a tendency to level out
somewhat above ~70 ms.
In Fig. 3, the output from the 1-9-9 protocol is shown. The behavior of
mean diffusivity in white matter is consistent with Fig. 2, and we note that
even in gray matter, mean diffusivity depends on time, with a roughly linear
behavior. The mean kurtosis tensor $$$\bar{W}$$$ was only reliably determined
for 4 diffusion times between 4 ms and 30 ms, due to SNR limitations and
gradient cross terms effects, which can be a confound in the 1-9-9 scheme. In
gray matter, $$$\bar{W}$$$ decreases smoothly with time, consistent with
diffusion becoming more Gaussian at long diffusion times. In contrast, $$$\bar{W}$$$
increases initially in white matter
(robust across animals), perhaps indicating that water has not fully sampled
the intra-axonal space in the transverse direction when the diffusion time is
below 10 ms. However, directionally resolved kurtosis values (underway), which
cannot be estimated with the fast protocols, are necessary for a deeper
understanding of the form of the kurtosis time dependence in white matter.
Conclusions
We demonstrated time dependence of parallel and
perpendicular diffusivity in white and gray matter of rat spinal cord, robust
across three animals. We presented the first demonstrations of time dependent
kurtosis in neural tissue using the 1-9-9 fast kurtosis protocol, and mean kurtosis
was found to depend on time in both white and gray spinal cord matter, with a
nontrivial time dependence in white matter. These may have significant
implications both for analyzing and planning kurtosis experiments as well as
for probing the neural tissues using DKI.
Acknowledgements
Lundbeck
Foundation grant R83–A7548, and Simon Fougner Hartmanns Familiefond. The study was also supported by funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Sklodowska-Curie grant
agreement No 657366.References
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