Investigation Of The Relationship Between Feature Detail And Stiffness Estimate In Magnetic Resonance Elastography (MRE) Elastograms
Eric Barnhill1, Florian Dittmann2, Sebastian Hirsch2, Jing Guo2, Jürgen Braun1, and Ingolf Sack2

1Institute of Medical Informatics, Charité Universitätsmedizin Berlin, Berlin, Germany, 2Department of Radiology, Charité Universitätsmedizin Berlin, Berlin, Germany

Synopsis

Magnetic Resonance Elastography (MRE) stiffness estimates show differentiated results by feature scale. Here progressive denoising was applied to study the relation between image sharpness (as meaured by Reduced Energy Ratio) and image stiffness estimate (as measured by complex shear modulus magnitude |G*|). Progressive complex-wavelet-based denoising appears to reach stable stiffness estimates in phantom and brain acquisitions. Images of maximum sharpness result in lower overall stiffness estimates than the stable global estimate, suggesting that coarse elasticity estimates do not average fine feature results, but measure a different stiffness scale.

Introduction

Recently several Magnetic Resonance Elastography (MRE) studies have shown elastograms with increased fine feature detail, posing a challenge to stiffness estimation illustrated in Fig. 1: fine features and interfaces add detail within a broader wavelength, differentiating fine-scale elasticity estimates from coarse.

Purpose

Here we sought to investigate the following questions: 1) Do MRE stiffness estimates scale with level of detail (i.e. smoothing parameter value) or can a stable stiffness estimate be found? 2) Does such an estimate contain fine feature detail? 3) If not, what is the optimal reconciliation of the two sources of radiological information: fine features and stable property estimates?

Methods

Metrics: Two multifrequency MRE acquisitions were subjected to progressive smoothing and we evaluated the relationship between two variables: complex shear modulus magnitude |G*|, as determined by Helmholtz inversion, and image detail level or sharpness, as determined by the Reduced Energy Ratio (RER), a technique common to computational photography [1]. Here the RER measurement was adapted to three dimensions, applied to an 8x8x8 block of retained frequencies.

Acquisitions: Full-field displacements of a commercial QA elasticity phantom (CIRS, Norfolk, VA), were acquired at 50, 62.5, and 75 Hz using an EPI protocol in [2]. The phantom's prescribed background shear modulus is 8.3Kpa +/- 0.4 Kpa (Young’s modulus of 25 Kpa +/- 5%). In vivo axial acquisitions of brain data were also studied at the three frequencies of 30, 35, and 40 Hz, with the protocol in [3]. Images were phase unwrapped using the LBE technique in [2], and inverted using MDEV Inversion [4].

Progressive Smoothing: It was shown in previous work [5] that progressive Gaussian smoothing causes increasing artefact at borders and interfaces in MRE results. Consequently, in the present study Gaussian smoothing was paired with soft thresholding in a complex dualtree wavelet (CDTW) basis, an approach expected to better handle waves with interfaces and discontinuities [6], applied to MRE in recent work [7] . Protocol 1: images were smoothed with an isotropic 3D Gaussian kernel, with standard deviation (SD) stepped from 0.5 to 3px in intervals of 0.1 (support of 15px). Protocol 2: images were progressively de-noised in an CDTW basis using soft thresholding with threshold (T) stepped from 0.05 to 3 in intervals of 0.05.

Results

Plots of stiffness against sharpness measurements are seen in Figure 2.

Stiffness: Gaussian stiffness estimates ranged, for phantom, 6.6-28.4KPa, and for brain, 816- 4,398 Pa, without a stable plateau. Wavelet estimates stabilised at mean values of 8248 Pa (phantom) and 1396 Pa (brain).

Sharpness: Peak RER values occurred early in all smoothing protocols. Phantom sharpness was highest in the Gaussian protocol at SD = 0.6 and highest in the CDTW protocol at T = 0.25 . Brain sharpness was highest in the Gaussian protocol at SD = 0.6 and highest in the CDTW protocol at T = 0.2.

Figure 3 illustrates the CDWT protocol results by contrasting three elastograms: an image that is noisy and of low sharpness (RER) : the image of maximum RER, but lower stiffness estimate than the stable estimate; and a later image with stable |G*| estimate, but low RER.

Discussion

As anticipated, the Gaussian approach did not yield stable stiffness estimates for the phantom or brain acquisitions. The instability of the Gaussian smoothing confirms the findings in [5]. The wavelet estimate however remained stable with increasing thresholding, supporting the CDTW as a stable way to handle noise and feature scale, and deliver a spatially averaged estimate for the brain.

In the CDTW case, the image of highest sharpness came in the first 10% of the elasticity estimate, while values were lower than the stable value. This suggests that fine-featured elastography, which will contain additional fine features and interfaces, will produce lower elasticity estimates for the brain than more coarsely resolved elastography, in which the wavelengths will not contain these small interfaces. Thus more coarsely resolved feature estimates are not a lower-resolution average of fine-featured estimates, but will be in a different value range corresponding to the coarser feature scale.

Conclusion

This preliminary investigation suggests that optimal sharpness of detail, and stable stiffness estimate, may occur at different threshold values for a denoising protocol. This may explain value discrepancies between high-resolution and low-resolution elastograms in some cases. As an approach to deriving a stable, global stiffness estimate, the CDTW soft thresholding protocol seems robust and warrants further development. Sharpness estimates may also warrant future use as measurements of feature scale fineness in elastograms, aiding the reconciliation of elasticity estimates at different scales, and for this the RER seems effective.

Acknowledgements

The authors acknowledge helpful conversations with Ivan Selesnick, Department of Electrical Engineering, New York University, and are grateful for phantom acquisitions from the Clinical Research Imaging Centre (CRIC), University of Edinburgh.

References

[1] Lee, S. Y., Yoo, J. T., Kumar, Y., & Kim, S. W. (2009). Reduced energy-ratio measure for robust autofocusing in digital camera. Signal Processing Letters, IEEE, 16(2), 133-136.

[2] Barnhill, E., Kennedy, P., Johnson, C. L., Mada, M., & Roberts, N. (2015). Real-time 4D phase unwrapping applied to magnetic resonance elastography.Magnetic Resonance in Medicine, 73(6), 2321-2331.

[3] Dittmann, F., Hirsch, S., Tzschätzsch, H., Guo, J., Braun, J., & Sack, I. (2015). In vivo wideband multifrequency MR elastography of the human brain and liver. Magnetic resonance in medicine.

[4] Papazoglou, S., Hirsch, S., Braun, J., & Sack, I. (2012). Multifrequency inversion in magnetic resonance elastography. Physics in medicine and biology,57(8), 2329.

[5] Barnhill, E., Kennedy, P., Brown, C., van Beek, E., & Roberts, N. (2014) How Does the Choice of Low-Pass Filtering Cut-Off Influence Stiffness Results In MR Elastography Helmholtz Inversion? Poster session at: Frontiers in Elasticity Symposium, Univ. Ill. Urbana-Champaign, 30 May.

[6] Selesnick, I. W., Baraniuk, R. G., & Kingsbury, N. G. (2005). The dual-tree complex wavelet transform. Signal Processing Magazine, IEEE, 22(6), 123-151.

[7] Barnhill, E. , Selesnick, I., Sack, I., Braun, J. , and Roberts, N. (2015) Impact of Wavelet Thresholding Methods on MR Elastography Human Brain Stiffness Results. Proceedings of IEEE 12th Annual Symposium on Biomedical Imaging 2015, #730

Figures

Figure 1. A shear wave passing through the brain is smooth through a homogeneous region (blue arrow) but shows sulcal interfaces in the form of small wave fluctuations (green arrow). As wavelength is used to estimate stiffness in elastography, the finer features are likely to present lower stiffness estimates.

Figure 2. Relation between stiffness estimate |G*| and sharpness estimate RER as images are progressively de-noised in Gaussian and CDTW protocols. The sharpest image, containing the finest feature scale, has a stiffness estimate differentiated from the stable global estimate.

Figure 3. Illustration of brain results. Left to right, Low sharpness, low stiffness estimate (b) Sharpest image, stiffness estimate lower than stable (c) High thresholding, low sharpness, stable stiffness estimate. All values Pa.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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