Synopsis
Magnetic Resonance Elastography (MRE) stiffness estimates show differentiated results by feature scale. Here progressive denoising was applied to study the relation between image sharpness (as meaured by Reduced Energy Ratio) and image stiffness estimate (as measured by complex shear modulus magnitude |G*|). Progressive complex-wavelet-based denoising appears to reach stable stiffness estimates in phantom and brain acquisitions. Images of maximum sharpness result in lower overall stiffness estimates than the stable global estimate, suggesting that coarse elasticity estimates do not average fine feature results, but measure a different stiffness scale.Introduction
Recently several Magnetic Resonance Elastography (MRE) studies have
shown elastograms with increased fine feature detail, posing a
challenge to stiffness estimation illustrated in Fig. 1: fine
features and interfaces add detail within a broader wavelength,
differentiating fine-scale elasticity estimates from coarse.
Purpose
Here we sought to investigate the
following questions:
1) Do MRE stiffness estimates scale with level of detail (i.e.
smoothing parameter value) or can a stable stiffness estimate be
found?
2) Does such an estimate contain fine
feature detail?
3) If not, what is the optimal reconciliation of the two sources of
radiological information: fine features and stable property estimates?
Methods
Metrics: Two
multifrequency MRE acquisitions were subjected to progressive
smoothing and we evaluated the relationship between two variables:
complex shear modulus magnitude |G*|,
as determined by Helmholtz inversion, and image detail level or
sharpness, as determined by the Reduced Energy Ratio (RER),
a technique common to computational photography [1]. Here the RER
measurement was adapted to three dimensions, applied to an 8x8x8
block of retained frequencies.
Acquisitions:
Full-field displacements of a commercial QA elasticity phantom (CIRS,
Norfolk, VA), were acquired at 50, 62.5, and 75
Hz using an EPI protocol in [2]. The phantom's prescribed background shear
modulus is 8.3Kpa +/- 0.4 Kpa (Young’s modulus of 25 Kpa +/- 5%).
In vivo axial
acquisitions of brain data were also studied at the three frequencies
of 30, 35, and 40 Hz, with the protocol in [3]. Images were phase unwrapped using the LBE
technique in [2], and inverted using MDEV
Inversion [4].
Progressive Smoothing: It was shown in previous work [5] that progressive Gaussian
smoothing causes increasing artefact at borders and interfaces in MRE
results. Consequently, in the present study Gaussian smoothing was
paired with soft thresholding in
a complex dualtree wavelet (CDTW) basis, an approach expected to better handle
waves with interfaces and discontinuities [6],
applied to MRE in recent work [7] . Protocol 1: images were smoothed with an isotropic 3D Gaussian kernel,
with standard deviation (SD) stepped from 0.5 to 3px in intervals of
0.1 (support of 15px). Protocol 2: images were progressively
de-noised in an CDTW basis using soft thresholding with threshold (T) stepped from 0.05 to 3 in intervals of 0.05.
Results
Plots of stiffness against sharpness measurements are seen in Figure
2.
Stiffness: Gaussian stiffness estimates ranged, for
phantom, 6.6-28.4KPa, and for brain, 816- 4,398 Pa, without a stable plateau. Wavelet estimates stabilised
at mean values of 8248 Pa (phantom) and 1396 Pa (brain).
Sharpness: Peak RER values occurred early in all smoothing protocols. Phantom sharpness was highest in
the Gaussian protocol at SD = 0.6 and highest in the CDTW protocol at
T = 0.25 . Brain sharpness was highest in the Gaussian protocol at SD
= 0.6 and highest in the CDTW protocol at T = 0.2.
Figure 3 illustrates the CDWT protocol results by
contrasting three elastograms: an image that is noisy and of low sharpness (RER) : the image of maximum RER, but lower
stiffness estimate than the stable estimate; and a later image with
stable |G*|
estimate, but low RER.
Discussion
As anticipated, the Gaussian approach did not
yield stable stiffness estimates for the phantom or brain acquisitions. The instability of the
Gaussian smoothing confirms the findings in [5].
The wavelet estimate however remained stable with increasing
thresholding, supporting the CDTW as a stable way to handle noise and
feature scale, and deliver a spatially averaged estimate for the
brain.
In the CDTW case, the image of highest sharpness came in the first 10% of
the elasticity estimate, while values were lower than the stable value. This suggests that fine-featured
elastography, which will contain additional fine features and interfaces, will produce lower elasticity estimates for the brain
than more coarsely resolved elastography, in which the wavelengths
will not contain these small interfaces. Thus more coarsely resolved
feature estimates are not a lower-resolution average of fine-featured estimates, but
will be in a different value range corresponding to the coarser
feature scale.
Conclusion
This preliminary investigation suggests that optimal sharpness of detail, and stable stiffness estimate, may occur at different threshold values for a denoising protocol. This may explain value discrepancies between high-resolution and low-resolution elastograms in some cases. As an approach to deriving a stable, global stiffness estimate, the CDTW soft thresholding protocol seems robust and warrants further development. Sharpness estimates may also warrant future use as measurements of feature scale fineness in elastograms, aiding the reconciliation of elasticity estimates at different scales, and for this the RER seems effective.
Acknowledgements
The authors acknowledge helpful conversations with Ivan Selesnick, Department of Electrical Engineering, New York University, and are grateful for phantom acquisitions from the Clinical Research Imaging Centre (CRIC), University of Edinburgh.References
[1] Lee, S. Y., Yoo, J. T., Kumar, Y., & Kim, S. W. (2009). Reduced energy-ratio measure for robust autofocusing in digital camera. Signal Processing Letters, IEEE, 16(2), 133-136.
[2] Barnhill, E., Kennedy, P., Johnson, C. L., Mada, M., & Roberts, N. (2015). Real-time 4D phase unwrapping applied to magnetic resonance elastography.Magnetic Resonance in Medicine, 73(6), 2321-2331.
[3] Dittmann, F., Hirsch, S., Tzschätzsch, H., Guo, J., Braun, J., & Sack, I. (2015). In vivo wideband multifrequency MR elastography of the human brain and liver. Magnetic resonance in medicine.
[4] Papazoglou, S., Hirsch, S., Braun, J., & Sack, I. (2012). Multifrequency inversion in magnetic resonance elastography. Physics in medicine and biology,57(8), 2329.
[5] Barnhill, E., Kennedy, P., Brown, C., van Beek, E., & Roberts, N. (2014) How Does the Choice of Low-Pass Filtering Cut-Off Influence Stiffness Results In MR Elastography Helmholtz Inversion? Poster session at: Frontiers in Elasticity Symposium, Univ. Ill. Urbana-Champaign, 30 May.
[6] Selesnick, I. W., Baraniuk, R. G., & Kingsbury, N. G. (2005). The dual-tree complex wavelet transform. Signal Processing Magazine, IEEE, 22(6), 123-151.
[7] Barnhill, E. , Selesnick, I., Sack, I., Braun, J. , and Roberts, N. (2015) Impact of Wavelet Thresholding Methods on MR Elastography Human Brain Stiffness Results. Proceedings of IEEE 12th Annual Symposium on Biomedical Imaging 2015, #730