Brain MR elastography with multiband excitation and nonlinear motion-induced phase error correction
Curtis L Johnson1, Joseph L Holtrop1,2, Aaron T Anderson3, and Bradley P Sutton1,2

1Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, United States, 2Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, United States, 3Department of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, United States

Synopsis

We propose a novel sequence for magnetic resonance elastography (MRE) of the brain based on multiband excitation and 3D encoding of the distributed slab with multishot spirals. This sequence allows access to optimal SNR efficiency and reduced distortions from field inhomogeneity, but also parallel imaging acceleration both in-plane and thru-plane without onerous artifacts and g-factor penalties. We also incorporate correction for nonlinear motion-induced phase errors through a kz-blipped spiral-in 3D navigator. In this abstract we demonstrate the performance of the sequence and its ability to capture whole-brain MRE data at 2x2x2 mm3 resolution in 3 minutes.

Introduction

Brain tissue viscoelasticity measured with magnetic resonance elastography1 (MRE) has continually shown promise in assessing neurodegenerative conditions2,3 and intracranial tumors4,5. To develop the ability of MRE methods to capture local property measures, many recent methodological advancements have focused on the pursuit of high-resolution viscoelastic maps through improved imaging techniques6-8. The challenge in acquiring high-resolution MRE data rests in balancing total scan time, signal-to-noise ratio (SNR), and distortions from field inhomogeneity. Our previous MRE efforts have introduced multishot spiral readouts6 to reduce distortion and 3D encoding to maximize SNR efficiency7. In this work we incorporate a multiband excitation to enable parallel imaging acceleration in the slice direction using a 32-channel head coil9 and further reduce scan time. We also introduce a nonlinear motion-induced phase error correction scheme10 for phase errors not handled by linear correction, such as from cardiac pulsation. The result is a flexible sequence for fast, high-resolution, whole-brain MRE that produces 2x2x2 mm3 images in 3 minutes.

Sequence Design

Figure 1 presents the proposed sequence, which includes standard MRE features such as flow-compensated motion encoding gradients. Details of novel imaging features are:

(a) Multiband excitation: The multiband pulses excite and refocus multiple slices at once, each separated in z and with different phase to reduce peak RF power11. The resulting volumes are excited in an interleaved fashion to cover the entire brain. This provides access to optimal SNR efficiency due to its use of short TR7.

(b) 3D distributed slab encoding: The resulting volume is encoded with a 3D stack-of-spirals that includes multishot constant density spirals12 in-plane with kz-blips. The total number of designed shots per volume is equal to the number of in-plane interleaved spirals times the number of excited slices. Parallel imaging acceleration with SENSE13 is accomplished by undersampling both in-plane (kxy) and thru-plane (kz).

(c) Nonlinear phase error correction: The low-resolution 3D navigator image of the distributed volume is acquired using a kz-blipped spiral-in trajectory14. The use of a navigator before readout reduces acquisition time and RF energy deposition by removing a second refocusing pulse. Phase error maps for each shot are recovered by comparing with the mean of all navigator images for a given volume7. Nonlinear correction is performed by applying the negative of these phase errors during iterative image reconstruction10.

Methods

We acquired MRE data with 2x2x2 mm3 isotropic resolution using the proposed sequence with a Siemens 3T Trio and32-channel head coil. The specific sequence parameters included: 4 band excitation; 60 total slices (15 volumes); 4 in-plane k-space readouts; FOV = 240 mm; matrix = 120x120; TR/TE = 1800/75 ms. Vibrations were generated at 50 Hz using the Resoundant pneumatic actuator system and 4 phase offsets were acquired. Iterative image reconstruction included correction for field inhomogeneity distortions15. We reconstructed datasets with various undersampling patterns and with/without motion correction, and compared resulting OSS-SNR16 and shear stiffness maps from nonlinear inversion17.

Results and Discussion

Figure 2 presents reconstructed images from a single volume with different sampling patterns. From magnitude difference maps, areas of large errors due to residual aliasing and g-factor penalties are lowest in the two-direction undersampled case (Rxy/Rz = 2/2) as compared to either in-plane or thru-plane undersampling only. This is further evidenced by the 2/2 case having the smallest NRMSE relative to fully-sampled. The ability to undersample in both directions allows for higher acceleration factors without the associated artifacts that compromise MRE results.

Figure 3 presents the MRE results from the undersampled dataset compared with the fully-sampled case. This dataset still maintains a high OSS-SNR16 for inversion stability (7.6) due to the SNR efficiency of the sequence. The resulting shear stiffness map is very similar to the fully-sampled case, with an NRMSE of only 5.0%. The majority of error is concentrated at ventricles, which are not valid regions for MRE analysis given their model-data mismatch.

Figure 4 demonstrates the performance of the nonlinear motion-induced phase error correction. Compared with magnitude images, complex displacement images, and shear stiffness maps from the uncorrected dataset, the corrected results exhibit clear improvement. This is especially evident through an SNR improvement of 18% (OSS-SNR: 7.6 vs. 6.4) and corrected phase inconsistencies in the slice direction.

Conclusions

We have demonstrated the performance of the proposed multiband sequence in acquiring high-resolution, high-SNR brain MRE displacement data quickly. By enabling parallel imaging acceleration both in-plane and thru-plane, we created a flexible sequence that can be used to improve the clinical adoption of high-resolution MRE methods or further push the bounds of achievable resolution.

Acknowledgements

Partial support provided by the Biomedical Imaging Center of the Beckman Institute at the University of Illinois at Urbana-Champaign and NIH/NIBIB grants R01-EB018230 and R01-EB001981.

References

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[15] BP Sutton, et al., IEEE T Med Imaging, 2003; 22(2):178-188.

[16] MDJ McGarry, et al., Phys Med Biol, 2011; 56(13):N153-N164.

[17] MDJ McGarry, et al., Med Phys, 2012; 39(10):6388-6396.

Figures

Figure 1: Proposed multiband, multishot spiral MRE pulse sequence. Components include multiband RF excitation and refocusing pulses, bilateral flow-compensated motion encoding gradients separated by a single vibration period, a blipped spiral-in 3D navigator before the echo time, and multishot in-plane spiral readouts with kz-encoding blips.

Figure 2: Magnitude images from a single multiband volume for fully sampled (1/1) and undersampled (1/4, 4/1, and 2/2) cases, and corresponding absolute difference maps. Undersampling in both directions is more accurate though reduced residual aliasing artifacts and g-factor penalties, as also evidenced by NRMSE being the lowest.

Figure 3: Stiffness maps from a single multiband volume for fully sampled (1/1) and undersampled (2/2) cases, and corresponding absolute difference maps. The undersampled case exhibits very low NRMSE with the majority of error concentrated at the ventricles, which are not valid regions for MRE analysis.

Figure 4: Comparison of results without and with nonlinear motion correction. Clearly visible are corrected phase inconsistencies in the slice direction. The OSS-SNR is also increased by 18%: from 6.4 to 7.6. This results in a high quality shear stiffness map with better anatomical agreement.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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