Seiji Kumazawa1, Takashi Yoshiura2, Akihiro Kikuchi1, Go Okuyama1, Daisuke Shimao1, and Masataka Kitama1
1Hokkaido University of Science, Sapporo, Japan, 2Kagoshima University, Kagoshima, Japan
Synopsis
To correct the distortion in EPI due to field
inhomogeneity, the information regarding the signal from adjacent points within
each voxel is needed. The PSF approach can provide this information. Our
purpose was to develop an image-based-method for estimating the PSF images in the
distorted EPI image using T1WI. Our method synthesizes the distorted image to
match the measured EPI image through the generation process of EPI image
according to a single-shot EPI k-space trajectory and field inhomogeneity. The results demonstrate that the PSF image for each voxel in distorted EPI image
can be estimated by proposed method using segmented T1WI instead of additional
acquisitions for PSF measurement.Echo-planar imaging
(EPI) suffers from geometric distortion due to magnetic field inhomogeneity. Among
the distortion correction methods, the most commonly used method is the field
map based approach, which provides the one-to-one correspondence relationship
between points in the original space and the distortion image.
1
However, the relationship between the original and the distorted space is not
one-to-one but many-to-one.
2 To correct the distortion, the
information on the contribution to signal from adjacent points within each
voxel is needed. The point spread function (PSF) approach can provide the
information of the signal contribution of a voxel for the neighboring voxels
because this approach can obtain the PSF imagefor each voxel.
3,4
However, this approach needs long scan time.
5 In this study, our
purpose was to develop a novel image-based method for estimating the PSF images in
the distorted EPI image using T1 weighted image (T1WI).
METHODS
Our basic idea for estimating the PSFs in
EPI is to reproduce the distorted EPI image based on MR imaging physics. Our
method synthesized the distorted image to match the measured EPI image through
the generation process of EPI image according to a single-shot EPI k-space trajectory
and field inhomogeneity. The field inhomogeneity was estimated by the
image-based method6 using segmented T1WI. To synthesize the distorted EPI image, an MR
signal was simulated on a voxel-by-voxel basis based on the tissue in segmented
T1WI. The MR signal in the presence of field inhomogeneity ΔB is given by $$S(k_{m},k_{n},\Delta B)=A\sum_{i=0}^{M\times N-1}K_i (k_{m},k_{n})\cdot D_i (k_{m},k_{n},\Delta B_i) \hspace{95pt} [1],$$where Ki and Di are given by $$K_i (k_{m},k_{n}) = \rho_i \cdot \exp \left\{-\frac{TE+m \Delta t_x + n \Delta t_y}{ T_{2i}} \right\} \cdot \exp \left\{ -j2 \pi (k_m x_i + k_n y_i)\right \}\hspace{3pt} [2]$$ $$D_i (k_{m},k_{n}, \Delta B_i) = \exp \left\{-j 2 \pi \left( \frac{k_m}{ G_x} + \frac{k_n}{G_y} \right) \Delta B_i\right\}\hspace{110pt} [3].$$Ki represents the contrast and position information of the tissue in voxel i, and corresponds to the k-space data from a single voxel without field inhomogeneity. Di represents the field inhomogeneity in voxel i causing the distortion, and corresponds to the Fourier Transform of the PSF.3 The synthesized EPI image was reconstructed by taking the 2-D inverse Fourier Transform of S. The field inhomogeneity was estimated by minimizing the least-square cost function using the synthesized EPI image and the measured EPI image. By taking the inverse Fourier Transform of Di calculated from the estimated field inhomogeneity map, we obtained the PSF image for each voxel. The spin echo (SE) EPI and T1WI data of a healthy volunteer were acquired using a 1.5-tesla clinical scanner (Magnetom, Symphony, Siemens) with an 8-channel phased-array coil. The SE EPI data was obtained by a single-shot EPI pulse sequence (FOV: 230 mm, TR=8600ms, TE=119ms, 128×128 in-plane resolution, 3 mm thickness). Three dimensional T1WI covering the same area in EPI was obtained by MPRAGE sequence (FOV: 230 mm, TR=2090ms, TE=3.93ms, TI=1100ms, FA=15°, 256×256 in-plane resolution, 1 mm thickness).
RESULTS
Figure 1(a, b and c) shows the measured SE EPI image from a healthy volunteer, the synthesized EPI image by our proposed method, and the absolute difference image between them, respectively. The estimated field map by the image-based method
6 is shown in Fig. 1 (d). The image shown in Fig.2a was reconstructed by the sum of the signals from
i=0 to the middle of the total voxels in Eq. [1]. It can be seen that a signal from a voxel affects the neighboring voxels. Figure 2b shows the examples of the PSFs in the voxels of the synthesized EPI image shown in Fig.2a.
DISCUSSION
The synthesized EPI image by our proposed method (Fig. 1b) was very similar to the measured EPI image (Fig. 1a). Figure 1 (c) demonstrates that our method can produce a reasonable synthesized EPI image using the estimated field inhomogeneity map (Fig. 1d). As shown in Fig. 2, our method can obtain the PSF image for each voxel. Each PSF image provides the information regarding the intensity distribution and the displacement of the voxel center due to the field inhomogeneity. Based on the PSF images obtained by our method, it could be possible to correct the geometrical distortion in EPI image using an appropriate deconvolution procedure.
CONCLUSIONS
We
have developed an image-based estimation method for the PSF images in the
distorted EPI image using the segmented T1WI and the field inhomogeneity map estimated by the
image-based method. Our results demonstrate that the PSF
image for each voxel in distorted EPI image can be estimated by our method
using segmented T1WI instead of additional acquisitions for PSF measurement.
Acknowledgements
This work was supported by Japan Society for the Promotion of Science (JSPS) KAKENHI Grant Number 15K08695 and 26293278.
References
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