Nadia Karina Paschke1, Andreas Neubauer1, and Lothar R Schad1
1Computer Assisted Clinical Medicine, Medical Faculty Mannheim, Heidelberg University, Mannheim, Germany
Synopsis
Sodium
MRI suffers from low signal-to-noise ratio, which can be compensated by
applying surface coils fitting the geometry of interest. Inhomogeneous coil
profiles hinder absolute quantification of in vivo tissue sodium concentration,
which is crucial for clinical assessment of pathological changes. Adequate
corrections of intensity inhomogeneities of reception radiofrequency fields are
essential and most standard proton imaging correction methods require manual
thresholding. We present a novel and automatic correction approach by postprocessing
images with Ensemble Empirical Mode Decomposition without additional scan time.
It reduces signal variations by 39%. This is shown in phantoms and in vivo.Introduction
Sodium
(23Na) MRI is an important tool to measure tissue sodium content
(TSC). Quantification of TSC provides valuable information about cell
viability, pathologic changes and cell metabolism. Influences of reception
radiofrequency field (B1-) inhomogeneities change the accuracy of
quantification results and therefore impair clinical interpretation. Due to low
sensitivity, 23Na MRI suffers from low signal-to-noise ratio (SNR)
compared to standard hydrogen (1H) MRI. Consequently, surface
coils are mostly used. Furthermore, due to high noise level some standard B1-
correction methods fail.
In
this work we present a novel approach to correct for B1-
field inhomogeneities by using Ensemble Empirical Mode Decomposition (EEMD),
which takes nonlinear B1- fields and noise corruption
into account. Corrections are carried out offline during postprocessing. No
additional scan time is needed.
Methods
EEMD [1,2] has been transferred
from a 1D signal analysis to a 2D spatial data decomposition [3]. The data $$$f(x,y)$$$ is decomposed in oscillation functions called intrinsic mode functions (IMFs) $$$g_i(x,y)$$$
and a monotonous trend, which remains as residue $$$r(x,y)$$$ (Figure 1): $$f(x,y) = \sum_i(g_i(x,y)) + r(x,y)$$ B1- correction
uses the information from the fourth IMF, since this mode contains an overlying
field variation. The inverse of $$$g_4(x,y)$$$ is normalized and multiplied
pixel-by-pixel to the original image (EEMD correction: EEMD-C, see Figure 2).
We compared EEMD-C with the uniform
phantom correction (PC) method [4], the Murakami correction (MC) method [5] and
the uncorrected original image. For PC, a large (35x35x25 cm3) uniform
phantom is scanned with same acquisition parameters as the object that requires
correction. Ideally, the uniform phantom should cause identical load into the
coils as the object. MC is carried out offline
during postprocessing. The B1- field of a surface coil in
presence of load can be measured if the same field of view is scanned with an
ideal volume coil. This is simulated in MC by thresholding and low pass
filtering the surface coil image.
Experiments
Sodium
images were acquired with different phantoms (two homogeneous phantoms [round
and rectangular cross section], one resolution phantom, and one liver phantom
[6]) and in vivo (cardiac scan, healthy female volunteer, 26 years) on a
clinical 3 T whole body scanner (Magnetom TIM Trio, Siemens Healthcare,
Erlangen, Germany) using a double resonant TxRx
23Na/
1H
body stem coil (Rapid Biomedical, Rimpar, Germany). Sodium signal was acquired
with a 4-channel surface array. A 3D density adapted radial gradient echo
sequence [7] which allows ultrashort echo times was used with the following
parameters: 4 mm isotropic resolution (10 mm for both homogenous phantoms), 150
ms repetition time, 0.7 ms echo time, 90° flip angle and 800 to 25000
projections depending on the size of field of view (no undersampling). For PC additional
scan time was necessary, the uniform phantom was scanned with identical
acquisition parameters.
Results
Qualitative
comparison (Figure 3) among results obtained from a liver phantom, a resolution
phantom, and cardiac imaging showed a reasonable intensity correction for both
EEMD-C and MC. In cardiac scan, a detailed separation between heart chambers
can be seen for EEMD-C. The liver phantom is brighter on the upper part for
EEMD-C, which leads to a more homogeneous intensity. Tumor imitations can still
be separated from healthy liver material. For the resolution phantom, the intensity
variations are smallest for MC, but blurring is introduced into the center. Quantitative
evaluations (Figure 4 a) and b)) were carried out as analysis of the round and
the rectangular phantom. EEMD-C provided slightly superior results compared to MC
for the round phantom (reducing the standard deviation from 53% to 32% and 35%,
respectively) but for the rectangular phantom MC reduced the standard deviation
from 84% to 47%, while EEMD-C decreased it to 52%. The same effect was observed
for slice profiles (Figure 4 c) and d)). On average for both homogeneous phantoms, EEMD-C
showed a reduction in intensity variations of 39%. MC obtained similar results,
while PC decreased variations by 2%.
Discussion
EEMD-C
corrects B
1- field inhomogeneities in sodium MR images.
Quantitative results were similar to MC. Qualitative results showed more
details than MC and PC. EEMD-C can be applied clinically without causing
scheduling issues or increasing patient discomfort by prolonging measurements. In
contrast to MC, EEMD-C needs no manual adaption for high noise images and
provides a fully automatic correction.
Conclusion
A
novel B
1- field correction method is developed, which uses 2D image decomposition into intrinsic mode functions calculated
by EEMD. Automatic corrections show promising initial results, feasibility and
a straightforward handling.
Acknowledgements
The MITIGATE project is co-funded by the
European Union under grant no 602306.References
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