Anja Jäger1,2, Thomas Beck2, and Andreas Maier1
1Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander- Universität Erlangen-Nürnberg, Erlangen, Germany, 2Siemens Healthcare, MR Application Development, Erlangen, Germany
Synopsis
A method
for detection of patient motion based on sub-volumes is presented. Current
methods for image-based motion detection are limited because rigid motion
parameters can only be detected for full volumes. This
limits the potential of navigator acceleration and causes undesirable effects
due to respiratory motion in some applications. Our novel approach extends the
rigid-body-motion model by detection based on a subset of slices relative to a
fully sampled reference volume. It is validated with phantom and in-vivo data
and allows for both considerable acceleration of navigator scans and
prospective correction of head motion in fMRI applications.Purpose
Image-based
methods to detect patient motion have previously been proposed for prospective
[1] motion correction. One limitation is that rigid motion parameters are
detected based on full navigator volumes. To provide the means for time-efficient protocols, navigators need to be short to fit into very short TI or TR
gaps. Especially in sequences which do not contain dead times like 3D FLASH,
the impact on SNR/time and scan time should be minimal [2]. Typical acquisition
times for volume navigators with typical resolution of 8x8x8mm³ are in the range
of 275ms for 3D-encoded EPI navigators covering 32 slices [3] down to 28ms for SMS-accelerated navigators with only 10 slices [4]. The main focus of previous
publications is the acceleration of acquisition techniques without making use
of the full potential of motion detection techniques.
The
proposed method detects patient motion based on a subset of 2D imaging slices. It
has the potential to significantly reduce the motion feedback delay for
prospective motion detection techniques which rely on a full volume for a motion
compensation update [1]. Additionally, the focus on a subset of slices forms
the basis to speed up navigator acquisitions. This also extends the
applicability to a wider variety of sequences without sufficient dead time. Validation
studies were performed in phantoms and in vivo to demonstrate that sub-volume-based motion detection can be used to accurately detect motion. Furthermore,
reduced intra-volume motion due to accelerated navigator acquisition
demonstrated improved conformity to the rigid-body-motion model assumption.
Methods
The proposed method is based on [1] which
iteratively searches for an optimal solution to map each volume to a reference
using a rigid motion model. Subject motion is approximated with a first-order
Taylor series using the gradient of a reference volume with respect to three
rotational and three translational motion parameters. This method is extended to
mapping sub-volumes to a fully sampled reference volume. An additional
weighting vector g is introduced to specify slice-specific weights. This way,
only slices with positive slice weights are entered into the Jacobian matrix to
find the least-square solution of the mapping problem.
\begin{equation}\vec{y}\approx\vec{x}+\underbrace{\begin{pmatrix}\frac{\partial x_0}{\partial p_0}&\dots&\frac{\partial x_0}{\partial p_5}\\\vdots&\ddots&\vdots\\\frac{\partial x_{n-1}}{\partial p_0}&\dots&\frac{\partial x_{n-1}}{\partial p_5}\end{pmatrix}}_{\vec{J}}\cdot\vec{p}~with~\frac{\partial
x_i}{\partial p_j}\approx\frac{(\vec{x}(+p_j)-\vec{x}(-p_j))}{2\cdot p_j}.\end{equation}
Optimal motion parameters p=[transx;transy;transz;rotx;roty;rotz]
to map the reference volume x to the navigator
volume y can be found iteratively using the pseudo-inverse of the Jacobian
matrix J:
\begin{equation}\vec{p}\approx(\vec{J}^T\cdot\vec{J})^{-1}\cdot\vec{J}^T\cdot(\vec{y}-\vec{x}).\end{equation}
The iterative update of navigator sub-volume y
uses a linear interpolation extending the slice interpolation to consider the
weighting vector g. The interpolation function f at slice position z0<=z*<=z1 based on neighboring sub-volume slices at position
z0 and z1 can be computed using
\begin{equation}f(z^*)=g_0\cdot f(z_0)+g_1\cdot f(z_1)=(z_1-z^*)\cdot f(z_0)+(z^*-z_0)\cdot f(z_1).\end{equation}
All experiments were conducted on a 3T MAGNETOM
Skyra scanner (Siemens Healthcare, Erlangen, Germany) using EPI BOLD prototype
sequences (2x2x2.1mm3, TR=3000ms, 96x96 matrix) with expressed prior written consent by the volunteers. The
principal frequency band of respiratory motion was found to be in a range [0.4,0.7]Hz. Respiration
was monitored using a respiratory belt.
Results
The rigid-body-motion model assumes that all motion happens between volumes.
This model assumption does especially not hold for long TR acquisitions and
motion parameters detected on full volumes. Fig.1 shows the impact of
physiologically induced motion to translational motion as a low-frequency
motion drift for slow sampling, whereas faster sampling reveals clear correlation
to physiologically induced and real head motion. Analogous to this, Fig.2 shows
the impact on rotational parameters. The proposed algorithm is able to reveal
these effects even for long TRs due to an increased motion update rate on the
basis of sub-volumes.
Fig.3
shows results of a phantom experiment. The phantom was moved manually during a
time series of 210 volume acquisitions. Parameters detected based on full
volumes [1] (blue) and motion detection using only slices with even slice index
(green) show very good correlation as confirmed by mean squared errors shown in Tab.1.
Discussion & Conclusion
We
demonstrated a technique for sub-volume motion detection which can be applied
for prospective motion correction. Navigator-based approaches benefit from
reduced acquisition time for each navigator due to reduced requirements to the
number of slices. Image-based approaches benefit from reduced feedback delay as
the motion update can be generated after a subset of slices compared to full-volume
updates [1]. Preliminary validation studies with phantoms and volunteers show
that motion parameters can be detected robustly based on a subset of 50% of all
slices with minimal effect on the accuracy. Additionally, reduced intra-volume
motion due to physiological motion is contained. With the possible extension to
simultaneous-multi-slice acceleration, this supports the application of image-based navigators for minimal delay.
Acknowledgements
No acknowledgement found.References
[1] Thesen
et al. MRM, 2000, 44:457-465
[2] Tidsall et al. ISMRM 2015 #0882
[3] Tisdall et al. MRM 2012, 68:389-399
[4] Bhat et al. ISMRM 2015, #817