Tim Nielsen1 and Peter Börnert1
1Philips Research, Hamburg, Germany
Synopsis
We present a reconstruction method to correct retrospectively for motion artifacts. The method identifies which part of the data set is affected by motion based on redundancy which is typically present in a multi-coil data set. No prior knowledge about coil sensitivity maps is needed. Instead, this information is directly estimated from the data along with the motion corrected image.Introduction
Motion
during data acquisition causes data inconsistency which typically leads to
ghosting artifacts. If there is sufficient redundancy in the data set, image
quality can be improved by identifying and rejecting corrupted data based on
self-consistency
1. If such an approach is based on SENSE, coil sensitivity
maps (CSM) need to be known. Here, we present a method which does not need
prior information about CSM but estimates CSM, image and corrupted data
simultaneously.
Methods
Data acquisition: We performed phantom and volunteer experiments on a 3T MR
scanner to demonstrate the new technique using a 13-channel head coil and a multi-slice
T2w fast spin-echo sequence for routine brain imaging (TE=100 ms,
0.6x0.6x3 mm3 resolution). The
temporal order of the acquisition was modified to separate interleafs which are
close in k-space as much as possible in time. Volunteers were instructed to
perform small incidental movements during the scan (swallowing, coughing, etc.)
Reconstruction algorithm: First step is to reconstruct images for each receive
channel. These images are used to calculate an initial estimate of the relative
coil sensitivities. In this step, we enforce spatial smoothness of the
resulting CSM by applying regularization. The width of the smoothing kernel is
matched empirically to a typical length scale for the used multi-channel coil. This
smoothing step is important because it suppresses propagation of noise and
artifacts from the single-channel images to the CSM estimate. Second step is an
iterative SENSE reconstruction to reject corrupted data and to remove their
influence from the reconstructed image. As an optional step inside the
iteration loop, the relative coil sensitivities are recalculated based on the
current image and the current set of non-rejected data each time an interleaf
is rejected.
Results
Figure
1 shows two examples of a reconstruction from data sets with motion. Images a)
show standard reconstructions without data rejection displaying typical motion
related ghosting artifacts. Fig. 1b shows the images after applying auto-calibrated
iterative SENSE with data rejection but without updating the CSM (this is an
image-space analogue to the k-space method COCOA
2). This image is already
much improved but for the case of the phantom some artifacts remain because
errors from the initial image carry over to the initial CSM. Updating the CSM
inside the iteration loop improves the reconstructed image even further
(Fig.1c). For the volunteer image, the initial CSM estimate was already of good
quality, so images b) and c) are equivalent.
Discussion
This
algorithm combines features of data rejection schemes with joint-SENSE
3,4
where CSM and image are updated iteratively. Driving force for both update
processes is minimizing data inconsistency. The distribution of inconsistent
data controls which action is taken: Inconsistencies which are located in a
connected region in image space lead to an update of the CSM. Inconsistencies
which are connected with respect to data acquisition time (i.e. profiles in
k-space belonging to the same interleaf) lead to data rejection.
Conclusion
An
iterative reconstruction enforcing self-consistency can improve image quality
substantially. Two sources of inconsistency are addressed here: information
about coil sensitivities and motion. The presented method can be applied to
data from many MRI sequences.
Acknowledgements
No acknowledgement found.References
[1]
Samsonov, et al. MRM 63,1104–1110
(2010)
[2] Huang et al.,
MRM 64, 157-166 (2010)
[3] Uecker et al., MRM 60, 674-682 (2008)
[4] Ying and Sheng, MRM 57, 1196-1202 (2007)