Mootaz Eldib1, Li Feng2, Daniel K Sodickson2, Zahi A Fayad1, and Hadrien A Dyvorne1
1Translational and Molecular Imaging Institute, Icahn school of Medicine at Mount Sinai, New York, NY, United States, 2Center for Advanced Imaging Innovation and Research (CAI2R), Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, New York, NY, United States
Synopsis
We propose a novel acquisition technique for motion-resolved abdominal imaging. Using a golden angle spiral projection trajectory, we were able to acquire reliable physiologic tracking data while acquiring 3D isotropic resolution images of the entire upper abdomen, resulting in an efficient self-gated sequence. We show that respiratory motion can be fully characterized in vivo in a minute-long 1.8 mm isotropic acquisition, which is suitable for applications such as PET/MR motion correction.Introduction
Motion-resolved volumetric imaging (4D-MRI) has
been an attractive research topic in the last several years. One important application
with the recent introduction of simultaneous PET/MR imaging has been the use of
4D-MRI to generate a motion model, which is subsequently applied to correct for
physiologic motion in the relativity low resolution PET data (1). For this application, a rapid, continuous and comprehensive
4D-MRI data acquisition is desirable, so that other clinically relevant images can
be collected within the same imaging session (2). The current standard method utilizes a self-navigated
stack-of-stars radial sequence (1, 3). However this approach suffers from limited spatial coverage
along the partition direction and relatively long acquisition time (~10 min). In
this study, we developed, implemented, and tested a novel self-navigated 3D spiral
sequence that provides higher design flexibility and faster acquisition
speed for respiratory motion correction. With this new acquisition scheme, respiratory
motion-resolved images covering the entire abdomen with 1.8 mm isotropic
resolution could be obtained in only 1:12 min.
Methods
Sequence
design: A 3D golden-angle
spiral projection gradient echo sequence that enables capture of respiratory
motion along the foot-head (F-H) direction was designed to acquire MR images covering
the entire upper abdominal volume with isotropic resolution. Multishot 2D
spirals (N=21 shots, spherical field of view 350 mm, 1.8 mm isotropic resolution,
readout duration 4.5 ms per arm) were acquired continuously with increment of the
azimuthal angle of the projection along the F-H axis (Fig. 1). Golden-angle increments were employed in order to ensure
good k-space distribution in the subsequent motion sorting procedure, similar
to previous approaches (4). With this hybrid spiral projection
sampling scheme, each 2D readout yields a projection plane along the principal
motion axis acquired at a fast rate (214 ms), while the complete 3D acquisition
yields isotropic depiction of the full abdominal volume, which can be
retrospectively sorted in into distinct respiratory motion states using the motion
signal extracted from the acquired data.
In
vivo MR imaging: The sequence
designed above was tested on healthy volunteers who gave
informed consent. Imaging was performed on a 3.0-T clinical scanner (Skyra, Siemens
Healthcare, Erlangen) equipped with spine and body matrix coil and 40 mT/m, 180
mT/m/ms gradient sets with the following parameters: TR/TE=10.2/0.7 ms, flip
angle=10o. The volunteers were instructed to breathe freely during the
entire scan and the acquisition time for the 3D spiral projection sequence was 1:12
min including 333 projections. Fat suppression was performed using 1-1 binomial
pulses. The RF pulse selected a 300 mm-thick sagittal slab including all
abdominal organs and excluding the volunteer’s arms.
Image reconstruction: 1D
projection profiles were first generated by summing each 2D spiral projection plane
along the foot-head axis, and respiratory motion was then derived from the 1D projection
profiles from a coil-element that is close to the diaphragm. The self-navigation
trace was extracted using 3 different methods: (i) 1D image registration using
the log difference as similarity metric, (ii) center of mass, and (iii) by
computing the 1st principle component in the time domain. The
k-space data were sorted into 7 different respiratory bins and each bin was
reconstructed separately using the non-Cartesian conjugate gradient-SENSE (CG-SENSE).
Reconstruction time was about 10 min per bin on a Linux server running Matlab.
A CUDA-accelerated nonuniform FFT toolbox was used for gridding operation (5).
Results
Figure
2 shows high quality
projection profiles that provide sufficient repetition rate to capture respiratory
motion. Among the three motion extraction algorithms, the registration approach
provided the most reliable tracking of respiratory motion signal, comparing to
the true displacement values in the projection profiles.
Figure 3 shows a reformatted 3D dataset reconstructed using 35
projections at end expiratory phase. The CG-SENSE method leads to improved image
quality with notable reduction of streak artifacts, which are present in the
direct reconstruction.
Figure 4
compares the averaged reconstruction with the motion-resolved reconstruction at
end-inspiration and end-expiration states. Motion sorting leads to reduction of
overall blurring. Signal intensity profiles taken along the liver-lung interface
show respiration-related displacements of order 10-15 mm, which is consistent
with previously reported values.
Conclusion
Our new acquisition approach that
utilizes a hybrid spiral projection trajectory enables reliable tracking of
physiological motion and efficient motion-resolved imaging of the whole
abdominal volume with 1.8 mm isotropic resolution in 1:12 min scan time. Such a
fast acquisition can provide comprehensive models for PET motion correction
without affecting routine clinical workflow.
Future work includes evaluating this
technique for cardiac motion estimation, as well as improving image
reconstruction using multi-dimensional compressed sensing techniques (4).
Acknowledgements
NIH funding support: R00NS070821, R01HL071021 and
P41EB017183. We thank Florian Knoll for providing the GPU nonuniform FFT reconstruction algorithms.References
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