Chia-Chu Chou1, Taehoon Shin2, JiaChen Zhuo2, Gadisetti Chandramouli3, Murali Cherukuri3, and Rao Gullapalli2
1Elecetrical Engineering, University of Maryland, College Park, Beltsville, MD, United States, 21Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, United States, 3National Cancer Institute, Bethesda, MD, United States
Synopsis
In Electron Paramagnetic Resonance Imaging (EPRI), each single k-space point is typically acquired per excitation and lengthens the acquisition time. In order to accelerate the imaging process, we raised a new image reconstruction method, Partial Fourier Compressed Sensing (PFCS), to address this problem. With PFCS, the images can be reconstructed from 25% of the k space and hence accelerate the imaging process to less than 1min. We also demonstrated PFCS reconstructed linewidth map were able to monitor the oxygen change in the tumor tissue.Introduction
Electron Paramagnetic Resonance Imaging (EPRI) is a powerful tool for
imaging oxygen distribution in tumor tissues
1. However, due to the
extremely short T2 relaxation of electrons, single point imaging
(SPI) is adopted in EPRI acquisition and leading to long scan time
1,2.
In order to capture the dynamic changes of oxygen level inside tumors, EPRI
acquisition with shorter temporal resolution is desired. We previously proposed
use of Partial Fourier reconstruction to aid compressed sensing reconstruction
for accelerated EPRI (PFCS)
3. In this study,
we explore the use of
different sampling masks and phase map estimation methods to improve PFCS and achieve
better image reconstruction.Methods
The PFCS method
uses conventional CS sampling masks, where a small cube was fully sampled at
k-space center (3% of k-space) with sparse sampling elsewhere (referenced as
cube-sampling). A fully-sampled phase map (e.g. from the first temporal volume)
was used to augment the original CS equation with fabricated measurements from
conjugate symmetric signals
3. Here
we propose
a new
spherical-sampling pattern with a larger fully-sampled spherical mask in the
center (12.5% of k-space) with the rest sparsely sampled (Fig. 1). In addition,
to eliminate erroneous phase map estimation from a different time point, we use
POCS4 (Projection Onto Convex Sets) method to estimate the phase map
from the under-sampled data itself at each time point.Experiments
All data were acquired using a home built EPRI scanner operating at
300MHz at a Zeeman field of 10.6mT. For phantom data, three tube phantoms containing
0%, 2%, 5% oxygen were imaged with 21x21x21 encoding steps. For in-vivo
imaging, a 25g mouse with SCC7 tumor cells implanted into the left hind leg was
imaged with 19x19x19 encoding steps. Alternating breathing cycles with air or
carbogen (95% O
2 plus 5% CO
2) was applied to the mouse
during the experiment to induce oxygen change in the tumor. Nine consecutive in
vivo images were imaged during the breathing cycle with 4min temporal
resolution for full k-space. Multi-gradients imaging process was applied to calculate oxygen map
5.
Data were then down-sampled with acceleration ratio of 4 (25% of k-space). Performances
of PFCS with different sampling masks and phase maps were compared to
conventional CS based on normalized mean square error (nMSE) with the true
image reconstructed from the fully-sampled k-space.
Results
Figure 2 shows the
comparison of the cube- vs. spherical-sampling masks for PFCS on tube phantom
and in vivo mouse leg.
Spherical-sampling preserves more image details and less
blurring than the conventional cube-sampling. Figure 3 shows a comparison of
different phase map estimation methods. Using POCS phase map,
the images can be
reconstructed even when using lower SNR data and results in a more accurate
linewidth map compared to previous phase map estimator. Figure 4 gave the
comparison of the reconstructed images using the new PFCS, PFCS, and CS
techniques.
The new PFCS retained most of the details of the true images than
the other methods, and provided a correct estimation on linewidth map. Figure 5
shows temporal images from the left hind leg of the mouse subjected to
alternating breathing of air and carbogen. Using the new reconstruction
technique, the differences in the T2 with carbogen can be characterized with
high temporal resolution. It is obvious the
linewidth maps reconstructed by the
POCS-based technique were able to capture the oxygen fluctuation induced by
carbogen inhaling.Discussion
We’ve demonstrated
with the new PFCS, the nMSE of reconstructed images is reduced by more than
50%. The spherical-sampling mask outperforms the cube-sampling mask and retains
the spatial resolution of fully sampled data. It is reasonable since
the sphere-sampling
mask contains a larger fully sampled center of k-space. This is especially
important for images in low SNR such as in vivo EPRI. For phase map estimation,
POCS gave a more accurate phase map estimation compared to the conventional
method. This is possibly due to
POCS estimates phase maps from the under-sampled
data itself rather than using the phase map from the first time slot and
prevent the estimation errors caused by phase difference between each time slot.
The improvement in linewidths enables us to differentiate oxygenation and
hypoxic regions and capture the oxygen change inside the tumor with only
one-fourth of k-space and achieves a shorter temporal resolution (~ 1 min),
which is an ideal temporal resolution for cycling hypoxia imaging
6. Future
work will continue to optimize the technique to obtain better temporal
resolution to better capture information on cycling hypoxia.
Acknowledgements
No acknowledgement found.References
[1]Subramanian
S, et al., Single Magn Reson Med, pp. 48:370-379, 2008.
[2]Subramanian S,
et al., Magn Reson Med, pp. 70:745–753,, 2013.
[3]V. Nagarajan, C.C. Chou, et. al,
"Accelerated EPRI Using Partial Fourier Compressed Sensing Re construction,"
in ISMRM, Milan, Italy, 2013.
[4]E.D. Lindskog
et al., Magn Reson, p. 92:126, 1991.
[5]K. Matsumoto et al., "Electron
Paramagnetic Resonance Imaging of Tumor Hypoxia: Enhanced Spa tial and Temporal
Resolution for In Vivo pO2 Determination," Magnetic Resonance in Medicine,
p. 55:1157–1163, 2006.
[6] Dewhirst
MW, Cao Y, Moeller B, "Cycling hypoxia and free radicals regulate
angiogenesis and radi-otherapy response," Nat Rev Cancer, p. 8:425–37,
2008.