Seul Lee1 and Gary Glover2
1Department of Electrical Engineering, Stanford University, Stanford, CA, United States, 2Department of Radiology, Stanford University, Stanford, CA, United States
Synopsis
Since half k-space reconstruction reduces scan time while
keeping spatial resolution, it can be used for T2* weighted images such as
functional MRI that requires fairly long TE. Functional MRI is sensitive
to off-resonance because there exist large susceptibility variations in
air-tissue interfaces such as sinuses. Existing half k-space reconstruction is
vulnerable to off-resonance since it might lose most of the image energy when
there is a large amount of phase shift. In this study, we suggest a new half
k-space reconstruction method that is more robust to off-resonance compared to
existing reconstruction method.Introduction
For a real object k-space is Hermitian symmetric, so only
half of k-space is required to reconstruct images, that is, sparse sampling can
be used. Half k-space reconstruction requires a few additional k-space lines to
overcome phase shifts using homodyne methods
1. However, the existing
half k-space reconstruction is vulnerable to off-resonance, which is important
for functional MRI. This method can result in loss of signal when B
0
gradients cause the center of k-space to be unsampled. In this study, we
introduce a new method for half k-space acquisition that is more robust to
off-resonance.
Methods
Data
Acquisition: With IRB approval, we scanned a human brain
using a 2D Cartesian sequence. Data were acquired using a 3T GE whole-body MRI
scanner equipped with a single-channel RF receive coil and a single-shot
gradient-echo sequence with TE/TR=25/2000 ms, 3.4 mm x 3.4 mm x 4 mm voxels,
FOV=22 cm×22 cm, 10 slices, BW=500 Hz/pixel, flip
angle=80 degrees, and scan time=2 min. To see how a linear gradient affects
data, we acquired reference data (no gradient applied) and data with a field gradient
applied using a linear shim in the PE direction. To
calculate the amount of shift in k-space from the phase map, the gradient
applied image is divided by the reference image. Image Reconstruction: For homodyne reconstruction,
half k-space lines and additional lines are acquired (Fig. 1 (a)) and for the
new method (even/odd), even lines of the left half, odd lines of the
right half and additional full k-space lines at the center (same number
of lines as those of homodyne) are acquired (Fig. 1 (b)). Fig. 1 (c) and (d) show
k-space data from both methods. We are able to reconstruct the
image with those half k-space lines using conjugate symmetry (1). Here x denotes PE direction, and the corresponding suffix is dropped on k. $$ \begin{align*} f(x) &=\int_{-\infty}^{+\infty} F_{e}(k)\cdot e^{ikx}dk +\int_{-\infty}^{+\infty} F_{e}(k)\cdot e^{ikx}dk \\ &=\int_{-\infty}^{0} F_{e}(k)\cdot e^{ikx}dk+\int_{-\infty}^{0} F_{e}^{*}(-k)\cdot e^{ikx}dk+\int_{0}^{+\infty} F_{o}^{*}(-k)\cdot e^{ikx}dk+\int_{0}^{+\infty} F_{o}(k)\cdot e^{ikx}dk \\&=\ 2Re(f_{e}+f_{o}) \ \cdot\cdot\cdot (1) \end{align*} $$
Conjugate symmetry is satisfied only when the signal
is real: $$$
F_{e}(k)=F_{e}^{*}(-k), \ F_{o}(k)=F_{o}^{*}(-k) $$$, however, the MR image is not purely real in practice.
Therefore, the phase of the image is unwound
by phase correction as in homodyne reconstruction. A phase map is reconstructed
from the fully sampled low frequency data, and its conjugate used to correct
the half-sampled data.
1) Simulation with reference data: To study how linear gradients affect to the images, we simulated different amount of shifts in
k-space to the reference data and reconstructed them using both methods.
2) Reconstruction of
gradient applied data: In order to guarantee conjugate symmetry while
avoiding effects of off-resonance, we corrected the shifted k-space center by
resampling. The amount of shift is calculated from
the phase map (3). We applied both half k-space reconstruction methods to the shift corrected data and compared them. $$ \begin{align} \delta_{offset}&=\gamma\int_{0}^{TE} {G(t)\ dt} = \gamma\cdot G\cdot TE, \ where \ G=\frac{{18.76 \ [Hz]}\ /\ {\gamma}}{resoultion \times pixel \ distance} = 0.0044 \ [G/cm] \ \cdot\cdot\cdot (3) \end{align} $$
Results and
discussion
1) Simulation with reference data: For reference
data, the reconstructed image using homodyne is
greatly attenuated as the amount of shift increases, however, the reconstructed
images using even/odd method is not attenuated as much as those from homodyne.
Since most of the image energy is at the center of k-space, the reconstructed
image will be highly attenuated if we do not acquire data at the center. If there
is a large amount of shift, the data at the center will be lost with homodyne
reconstruction (Fig. 2 (a)). However, even/odd reconstruction does not lose the
data at the center even though there is a large amount of shift (Fig. 2 (b)).
2) Reconstruction of gradient
applied data: For
gradient applied image, there is a 15.0 sample shift in PE direction from
calculation described in method and we corrected them so that conjugate symmetry
can be applied. The reconstructed images
using both reconstruction methods are shown in Fig. 3. Without gradient
applied, homodyne acquisition shows signal loss at the center and frontal
part of the brain (Fig.3 (a)), however, even/odd acquisition results in
successful reconstruction (Fig. 3 (b)). The gradient applied images are reconstructed
after shift correction (Fig. 3 (c) and (d)). Both images
are comparable to the reference images (Fig. 3 (a) and (b)). As with the
reference images, homodyne acquisition shows signal loss at the center and
frontal part of the brain, however, even/odd acquisition shows
successful reconstruction (Fig. 3 (c) and (d)).
Acknowledgements
We thank KE Jang for helpful discussions. Funding for this work was provided by: NIH
EB015891References
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