JeongTaek Lee1,2, Jinil Park1,2, and Jang-Yeon Park1,2
1Center for Neuroscience Imaging Research, Institute for Basic Science, Suwon, Korea, Republic of, 2Department of Biomedical Engineering, Sungkyunkwan University, Suwon, Korea, Republic of
Synopsis
Radial-acquisition
imaging is recently gaining more popularity. For RA image reconstruction, both
fast Fourier transform via gridding and filtered back-projection are available.
Because of the processing time, FFT is dominantly used. If the processing-time
issue is resolved, 3D FBP can be promising in the case of FID sampling or echo
sampling with mis-centering of k-space. In this study, we propose a strategy
that can significantly reduce the reconstruction time of 3D FBP in combination
with a new RA scheme. Performance of the proposed method was demonstrated in
phantom and human brain imaging at 3T.Purpose
Radial-acquisition(RA)
imaging is recently gaining more popularity in MR community due to its ability
of enabling a shorter TE as well as being tolerant to motion artifacts [1].
For RA image reconstruction, both fast Fourier transform (FFT) via gridding and
filtered back-projection (FBP) are available. However, for 3D RA, FFT is dominantly
used because 3D FBP is known to need a much longer reconstruction time. If this
processing-time issue is resolved, 3D FBP can be promising in the case of FID
sampling that needs to estimate the true k=0 point, or echo sampling with mis-centering
of k-space in the presence of gradient delays or B0 inhomogeneities [2],
since the signal at k=0 is not required in FBP due to the ‘M-filter’ intrinsically
needed in FBP reconstruction. Here we propose a strategy that can significantly
reduce the reconstruction time of 3D FBP in combination with a new RA scheme. Performance
of the proposed method was demonstrated in phantom and human brain imaging at
3T.
Methods
For the conventional 3D FBP, a set of planar
projections are needed for back-projection, which are obtained using the 3D
projection slice theorem, i.e., by acquiring an echo or a FID signal along the
(θ,Φ) direction and performing FT (Fig. 1) [3]. In this case, the most time-consuming
process occurs when the ‘2D’ planar projections are back-projected for ‘3D’
reconstruction, which is called ‘Direct 3D FBP’ in Fig. 1B [4]. In contrast, only two steps
of ‘2D FBP’ are used for final 3D reconstruction in the proposed method (Fig. 2B), which dramatically reduces the processing
time. For this purpose, radial data need to be collected in a series of
circular trajectories (Fig. 2A) and each circular trajectory is attained by
increasing Φ between 0 and 2π for each given θ (0≤θ≤π).
For demonstration, phantom and human brain
were scanned at Siemens 3T(Trio) using a
4-channel volume coil. For all experiments, a 3D radial gradient-echo sequence
was used acquiring a partial echo with a minimum TE. All data was collected using the proposed radial-acquisition strategy depicted in Fig.
2A. Scan parameters were: TR/TE = 3/0.22ms, FOV = 300m3, FA =
5°, number of projections = 64.8k, matrix
size = 6003(oversampled), isotropic resolution = 1mm3.
Images were reconstructed offline using a
home-built MATLAB (ver. 8.2.0; R2013b) program on a workstation equipped with an
Intel-Xeon CPU (3.50GHz processor) and an NVIDIA Quadro K600 graphics card. For
comparison, reconstruction was performed using 3D FFT, direct 3D FBP, and the
proposed method. For the 3D FFT, a gridding procedure was coded in C language
to reduce the processing time. MATLAB internal functions of ‘iradon’ and ‘imrotate’
were used for back-projection and matrix rotation, respectively. To validate the
robustness of the FBP in mis-centering of k-space, some echo peaks of the original
data were shifted in order to have a larger variation. While the maximum
variation of the echo-peak positions in the original data was 2 sample points
(= 7.6μs), that in the echo-peak-shifted data was 17 sample points (= 64.6μs).
Results and Discussion
Figure 3 shows the axial slices of an ACR
phantom and human brain reconstructed using the 3D FFT, the direct 3D FBP, and
the proposed method. 3A~3D were from the original data and 3E~3J from the echo-peak-shifted
data. When mis-centering of k-space is small, the proposed FBP showed almost
same image quality as the 3D FFT. However, with large mis-centering, the 3D FFT
showed typical mis-centering artifacts such as contrast variations from the
center to the periphery, whereas both 3D FBP methods provided as good an image
quality as C and D with small mis-centering, showing their tolerance to
mis-centering of k-space.
In terms of processing time (Table 1), the proposed method took only a 1min 25sec to
reconstruct 6003 matrix size, which was much shorter (by a factor of
225) than that of the direct 3D FBP (= 318min 45sec). Even the 3D FFT using
gridding took almost 10 times longer reconstruction time than the proposed
method.
Conclusion
We
suggested an acquisition and reconstruction strategy for fast 3D FBP. The results
show that the proposed method is able to dramatically shorten the reconstruction
time, when compared to the direct 3D FBP and even the 3D FFT using gridding. Once
the 3D FBP is practically available in terms of the processing time as shown
here, it will be very useful in 3D RA imaging including FID sampling,
especially when gradient delays or eddy currents cause significant mis-centering
of k-space, or in the presence of large field inhomogeneities.
Acknowledgements
This work was supported by IBS-R015-D1-2015-a00References
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