Li Zhao1, Yang Yang2, Chuan Huang3, and Craig Meyer2
1Radiology, Beth Israel Deaconess Medical Center, Boston, MA, United States, 2Biomedical Engineering, University of Virginia, Charlottesville, VA, United States, 3Departments of Radiology, Psychiatry, Stony Brook Medicine, Stony Brook, NY, United States
Synopsis
Parameter mapping can be acquired rapidly by MR fingerprinting. It requires a pseudo random pulse sequence to build an unique dictionary between the
evolution of signal and parameters. The problem can be simplified when the dimension of the dictionary is
relatively low. Here, we propose a dictionary that accelerates T2 mapping with dictionary and conventional sequence.Purpose
Quantitative tissue parameter mapping of fundamental MRI
parameters, such as T1 and T2, can aid in the detection of diffuse disease, discriminate
between true and mimicked pathology, and improve estimates of derived
parameters such as cerebral blood flow. However,
the need to acquire multiple encoding steps prolongs the scan time, which can
limit the use of parameter mapping. Accelerated
parameter mapping is possible using a variety of methods, including parallel
imaging, compressed sensing, and MR fingerprinting (MRF)
1. MRF builds a unique
dictionary between the evolution of signal and parameters of interest using a pseudo
random pulse sequence. However, the problem can be simplified when the
dimension of the dictionary is relatively low, such as in T2 mapping, where
there is only one parameter of interest.
It is then possible to build a similar dictionary, but using
conventional sequences, which simplifies the problem. In this work, we propose a dictionary that accelerates
T2 mapping by representing T2 signal decay using an appropriate model.
Methods
In this work, we build a dictionary that simplifies to a
lookup table to accelerate T2 mapping.
A related idea was proposed to improve robustness of ASL quantification2. The key of the proposed method is to build
a monotonic dictionary of scalar values, rather than a dictionary of vectors as
in conventional MRF. It contains N elements (dn), one for each T2 value of
interest, which is similar to the unique representation of MRF. However, this method uses a pulse sequence
designed to discriminate between the values of interest, rather than a
randomized pulse sequence as in MRF. For
T2 mapping, we simply use the summation of density-normalized signals across
multiple TEs:
$$d_n=\sum_i exp\left(-\frac{TE_i}{T2}\right)$$
The summary of the
algorithm is as follows:
1. Transform
the undersampled k-space to aliased T2-weighted images.
2. Normalize
the T2-weighted images by a proton density map, which is initialized by the sliding
window method at the first iteration and the aliased image with the shortest TE
in following iterations.
3. Calculate
the remodeled signal using the above equation pixel by pixel and look up
corresponding T2 in the dictionary by linear interpolation.
4. Use the
resulting T2 map to estimated T2-weighted images at each TE. A sensitivity map is
provided as prior knowledge and used to calculate estimated k-space data based
on these images.
5. Replace
the missing k-space data with the estimated k-space data.
6. Iterate
through the above steps until a stopping criteria is met.
This method was
verified on a numerical phantom with four T2 ROIs (50, 80, 120, 250ms)3. The T2-weighted images were simulated at 32
TEs with echo spacing 5ms. Complex Gaussian noise was added, corresponding to
SNR 50 for the proton density image. The dictionary was built with T2s from 1
to 300 ms.
A spin echo
sequence was used for validation scans of an ex-vivo brain to avoid potential confounding
effects of a multi-echo sequence, such as RF inhomogeneity and stimulated echoes.
The parameters were as follows: matrix size 128 × 128, FOV 180 mm × 180 mm, TR
500 ms and slice thickness 4 mm. 32 TEs were acquired with echo times spaced by
2 ms. Data processing and image reconstruction were performed using MATLAB 2015a.
Result and Discussion
Fig. 1 shows the
dictionary from the model, which is monotonic. Fig. 2 shows the performance of
the proposed method on a simulation phantom. With acceleration factors of 4 to
16, the resulting T2 maps had negligible undersampling artifacts (Fig. 2 top),
but increased noise and absolute error (Fig. 2 bottom). NRMSE was 0.09, 0.11
and 0.14 respectively. Similar results of the experiments are shown in Fig. 3.
For acceleration factors of 4, 8 and 16, NRMSE values were 0.060, 0.064 and
0.099.
By focusing on one
parameter, this method simplifies both data acquisition and parameter map
calculation relative to MRF. Because this
is a look-up table method that uses linear interpolation, the computational
complexity is much less than for compressed sensing methods. The current method
is based on minimizing the difference between the acquired and estimated sum of
signals weighted by T2 decay. This is a
different criterion than least squared error, which likely accounts for some of
the residual error as measured by NRMSE.
Further work is required to determine how the method would need to be
adapted for use with faster multi-echo sequences, including methods to account
for non-uniform B1.
In conclusion, the
proposed method estimates T2 maps accurately, with high acceleration factors
and low computational complexity.
Acknowledgements
No acknowledgement found.References
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