Synopsis
Accurate quantification of T2 values in vivo poses a
long-standing challenge, hampered by the inherent bias of fast multi-SE protocols
by stimulated and indirect echoes, non-rectangular slice profile and transmit-field
inhomogeneities. This bias, moreover, is dependent on the sequence implementation
and parameter-set employed, and thus varies between scanners and vendors. We present full stability and reproducibility
tests of a recently developed T2 mapping technique – the
echo-modulation curve (EMC) algorithm – which uses precise Bloch
simulations of the pulse-sequence scheme to deliver the true T2
value of the tissue in a manner that is independent of the parameter-set and scanner being used.Introduction
T
2 is one of the most commonly used MRI contrasts for non-invasive
diagnosis and characterization of pathologies. Quantitative evaluation of T
2
has been shown to be valuable for various applications including stroke
1, multiple sclerosis
2,
cardiac imaging
3, cancer detection
4, and musculoskeletal imaging
5. Assessment of T
2
contrast, however, is usually performed in a visually qualitative manner making
it observer dependent and preventing utilization of the full dynamic range that
can be generated by T
2 contrast. This limitation is due to the challenges of quantifying T
2 in vivo including the very long scan times associated
with full spin-echo (
SE) acquisitions (tens of minutes), or, in the case
of multi-SE (
MSE) protocols, the inherent deviation of the T
2
decay curve from the theoretical exponential model
S(
t)=S
0exp[–
t/
T2] due
to stimulated and indirect echoes, non-rectangular slice profiles, and inhomogeneous
transmit (B
1+) field profiles. Strategies for overcoming these effects
include omitting the first echo-time (
TE) point, excluding odd TE
data points, or incorporating the above imperfections into a more realistic
signal model
6-11. Recently, a new technique – the Echo
Modulation Curve (
EMC) algorithm – has been introduced
12,13,
which relies on precise Bloch simulations of the MSE pulse-sequence, to produce
the true T
2 values of the tissue with excellent correlation to
values acquired using gold-standard single spin-echo. In this work we present the results of
an in vivo stability benchmark of the EMC technique, performed on healthy
volunteers and evaluating accuracy, precision and reproducibility over a wide
range of parameter settings, and in comparison to conventional monoexponential
fitting.
Methods
Data acquisition: Data
were collected from 30 healthy volunteers on whole-body 3 T scanners (Siemens
Skyra and Trio) using a standard MSE protocol. Common scan parameters were
{TR=2500 ms, N-echoes=10, res=1.7x1.7mm2, Tacq=2:44min
(2x GRAPPA acceleration)}.
Reconstruction: T2 maps were generated using (1)
the EMC algorithm12, and (2)
by fitting the set of DICOM time series to a conventional monoexponential
model.
Inter-scan and parameter-set stability
tests: A series of MSE scans were performed on the brain of a single healthy
volunteer using 6 different parameter sets (see Table 1). Each scan was repeated
twice on each of the two scanners to a total of 24 scans. The volunteer was,
moreover, taken out and back in the scanner between each pair of scans. Mean, standard-deviation
(SD), and coefficient of variation (CV)
were calculated for 5 region-of-interests (ROIs): genu, splenium of
corpus callosum, caudate nucleus head, frontal white matter, and periventricular
white matter (GNU, SPL, CDN, FWM, PWM).
Inter subject variability
tests: MSE data was collected for 30 healthy volunteers, ages [25…52] (16
males) using parameter-set #2 in Table 1. Average values of the mean, SD, CV over
the entire group, were calculated for 6 ROIs: GNU, SPL, CDN, FWM, putamen (PTM),
and thalamus (TLM).
Results
Inter-scan stability: Table 2 summarizes the mean, SD and
CV values averaged across all 24 stability scans. The EMC technique offers
better accuracy (mean value), higher precision (lower SD value), and lower
relative spread (lower CV), over the assayed scanners and parameter-sets. The variability between each set of two identical
scans is decreased from 4.6% for exponential fit to 1.6% for EMC fit.
Inter-subject
variability tests are listed in Table 3: consistently higher CV is seen for the
exponentially fitted values for all ROIs suggesting that the lower precision
(higher SD) of this fitting approach, is not just due to scaling of the mean
value but reflects an inconsistent spread of the values’ distribution.
Discussion
Fitting techniques which do not account for the full set of coherence
pathways occurring in multi echo protocols suffer from inherent bias and
increased spread (i.e., SD and CV) of the measured T
2 values. This
deficiency is moreover exacerbated by the fact that the fitting error will depend
on the baseline T
2 values, the protocol implementation and the parameter
set being used. By incorporating all the experimental factors into the signal
model, the EMC algorithm is able to overcome these limitations and extract the
true T
2 values of a tissue, in a fashion that is protocol- and
scanner-independent, while performing in clinically relevant scan times. The EMC framework can be further
accelerated using radial sampling strategies
13 and extended
to model other contrasts (e.g. T
1, diffusion, T
2*),
to derive multi-component T
2 distributions, and to support arbitrary
acquisition schemes.
Acknowledgements
Financial
support: Helen and Martin Kimmel Award for Innovative Investigation. NIH
Grants: P41 EB017183; RO1
EB000447.References
[1] Siemonsen S et al. Quantitative T2 Values Predict Time From Symptom Onset
in Acute Stroke Patients. Stroke 2009; 40(5): 1612-16.
[2]
Lund H et al. Cognitive deficits in multiple sclerosis: correlations with T2 changes in
normal appearing brain tissue. Acta
Neurol Scand 2012; 125(5): 338-44.
[3] Eitel I, Friedrich MG. T2-weighted cardiovascular magnetic resonance in
acute cardiac disease. J Cardiovasc Magn
Reson 2011; 13(1): 13.
[4] Liu W, Turkbey B, Sénégas J, Remmele S, Xu S, Kruecker J, Bernardo
M, Wood B, Pinto P, Choyke P. Accelerated T2 mapping for characterization of
prostate cancer. Magn Reson Med 2011; v. 65(5), p. 1400-6.
[5] Pan J, Pialat J, Joseph T, Kuo D, Joseph G, Nevitt M, Link T. Knee
cartilage T2 characteristics and evolution in relation to morphologic abnormalities
detected at 3-T MR imaging: a longitudinal study of the normal control cohort
from the Osteoarthritis Initiative. Radiology 2011; v. 261(2), p. 507-15.
[6] Warntjes J, Dahlqvist O, Lundberg P. Novel method for rapid,
simultaneous T1, T*2, and proton density quantification. Magn Reson Med 2007;
v. 57(3), p. 528-37.
[7] Lukzen N, Petrova M, Koptyug I, Savelov A, Sagdeev R. The
generating functions formalism for the analysis of spin response to the
periodic trains of RF pulses. Echo sequences with arbitrary refocusing angles
and resonance offsets. J Magn Reson 2009; v. 196(2), p. 164-9.
[8] Lebel R, Wilman A. Transverse relaxometry with stimulated echo
compensation. Magn Reson Med 2010; v. 64(4), p. 1005-14.
[9] Doneva M, Börnert P, Eggers H, Stehning C, Sénégas J, Mertins A.
Compressed sensing reconstruction for magnetic resonance parameter mapping.
Magn Res Med 2010; v. 64(4), p. 1114-20.
[10] Prasloski T, Mädler B, Xiang Q, MacKay A, Jones C. Applications
of stimulated echo correction to multicomponent T2 analysis. Magn Reson Med
2012; v. 67(6), p. 1803-14.
[11] Ma D, Gulani V, Seiberlich N, Liu K, Sunshine J, Duerk J,
Griswold M. Magnetic resonance fingerprinting. Nature 2013; v. 14(495(7440)),
p. 187-92.
[12] Ben-Eliezer N, Sodickon,
DK, and Block, KT. Rapid and accurate T2 mapping from multi-spin-echo data
using Bloch-simulation-based reconstruction. Magn Reson Med 2015; 73(2):
809-17.
[13] Ben-Eliezer N, Sodickson DK, Shepherd T, Wiggins GC, Block KT.
Accelerated and motion-robust in vivo T2 mapping from radially undersampled
data using bloch-simulation-based iterative reconstruction. Magn Reson Med
2015; doi: 10.1002/mrm.25558. [Epub ahead of print].