Dmitry Kurzhunov1, Robert Borowiak1,2, Marco Reisert1, Philipp Wagner1, Axel Krafft1,2, and Michael Bock1
1University Medical Center Freiburg, Dept. of Radiology - Medical Physics, Freiburg, Germany, 2German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK), Heidelberg, Germany
Synopsis
This work presents a comparison analysis of different
reconstruction techniques for quantification of 3D maps of the cerebral
metabolic rate of oxygen consumption (CMRO2) in human brain. Several
17O-MR 3D data sets of a healthy volunteer’s brain were acquired at a
clinical 3 Tesla MR system with inhalation of 70%-enriched 17O2
gas. Iterative image reconstruction procedures, e.g. where different
co-registered 1H MR image data sets of high spatial resolution act
as edge-preserving constraints, are compared and used to improve the image
quality and the precision of CMRO2 mapping. Anisotropic Diffusion as
non-Homogeneous Constraint (ADHOC) is shown to be superior.Introduction
$$$\hspace{1cm}$$$Abnormalities in brain oxygen metabolism are found in
tumors, cerebrovascular and neurodegenerative diseases. A useful biomarker of
metabolic brain activity is the cerebral metabolic rate of oxygen consumption
(CMRO2). CMRO2 can be quantified with direct 17O-MRI
[2-6] by fitting a pharmacokinetic model to the signal dynamics seen during and
after the administration of 17O-enriched gas. So far, 17O-MRI
was applied mainly at ultra-high fields (B0≥7T)
to overcome the low SNR at clinical field strengths (B≤3T) [4]. Recently, preliminary results showed that 17O-MRI
is feasible at clinical field strengths [5,6].
$$$\hspace{1cm}$$$The aim of this work is to enable of 3D CMRO2
quantification at clinical field strengths by using prior information from
co-registered 1H-MR data in combination with iterative, constrained
image reconstructions. For that purpose, Anisotropic Diffusion as
non-Homogeneous Constraint (ADHOC) using 1H MPRAGE data [5] were
further expanded to T2-weighted images, the constraint weighting
factors and the width of the AD operators were optimized, best values are
reported and compared to binary mask (BM) constraint.
Material and Methods
$$$\hspace{1cm}$$$4D 17O data sets were acquired in two in-vivo 17O-MR experiments [3-6]
on the same volunteer with inhalation of 2.5L of 70%-enriched 17O
gas (NUKEM Isotopes), at a nominal resolution Δx=10/8mm and a temporal
resolution of 1min. For 17O-MRI, a clinical 3T MR system (Tim Trio,
Siemens) and 3D ultrashort TE
(UTE) density-adapted projection sequence (DAPR) [7] were used.
Kaiser-Bessel (KB) gridding
without/with Hanning filtering was used to reconstruct 17O MR
images. After gridding, an iterative reconstruction was applied that minimizes
the objective function:
$$J(\textbf{x})=\mid\mid{}\textbf{A}\cdot{}\textbf{x}-\textbf{y}\mid\mid_2^{2},$$
where A denotes the system
matrix that maps the image x to the corresponding raw data y, λ is the
weighting factor of the regularization term R, which is initially chosen to be BM of the brain:
$$\textbf{R}_{\textbf{BM}}=\mid\mid{}\textbf{BM}\cdot\textbf{x}\mid\mid_2^{2}.$$
$$$\hspace{1cm}$$$
To
include more anatomical information, ADHOC method with a high
resolution proton prior, co-registered to the 17O-MRI data,
was used for
an edge-preserving reconstruction. Here, the regularization term contains a
gradient operator 𝒈
which is applied to either T1- or T2-weighted 1H
images:
$$\textbf{R}_{D}=\int{}\textbf{x}\triangledown{}(\textbf{D}\triangledown{}\textbf{x})\hspace{1cm}and\hspace{1cm}\textbf{D}=(1-\frac{\textbf{g}\cdot\textbf{g}^{T}}{\mid\textbf{g}\mid^2}\diagup\sqrt{1+\frac{\textbf{g}^{2}}{a^{2}}})$$
$$$\hspace{1cm}$$$After image reconstruction,
CMRO2 values were calculated from the signal time curves using a
model fit [3]. The factor λ for both BM and ADHOC
constraints and for ADHOC were
tested over the range 𝜆∈[10…105] and a∈[10-3…103]
to find the best correspondence with 15O-PET CMRO2 values
[1] without image distortions. For
comparison, theoretical CMRO2 maps (Fig.1f) were calculated based on
tissue segmentation from 1H MPRAGE data and PET values [1]. All reconstructed images and maps were interpolated to 643.
Results and Discussion
$$$\hspace{1cm}$$$3D CMRO2 maps of different reconstruction
techniques are shown in Fig.1. 17O-MR images reconstructed with KB
gridding without filtering have low SNR=7 (Fig.1a) prohibiting pixel-wise fitting
of CMRO2 (Fig.1g). Usage of BM information (Fig.1c) does not improve
pixel-wise CMRO2 quantification (Fig.1i), whereas CMRO2
maps obtained with either Hanning filter (Fig.1b,h) or ADHOC (Fig.1j,k) show some
anatomical features. Reconstruction with ADHOC, however, has highest amount of
pixels with successfully fitted CMRO2 values (Fit%) compared
to any other reconstruction (Tab.1).
$$$\hspace{1cm}$$$Weighting factors λ for penalty terms are optimized
for highest Fit% and lowest root-mean-square deviation (RMSD) to the
theoretical value. For BM it was λ=1000/10000,
and λ=4000/10000
with a=10-3 for both T1/T2-based
ADHOC for Δx=10/8mm. Both CMRO2 maps with T1-and T2-based ADHOC
reconstructions are similar (Fig. 1j,k), with a better quality and best
Fit% (99%) and higher precision compared to Hanning-filtered KB
gridding. Figure 2 shows a model fit to the signal-time curve in a
representative GM pixel with the ADHOC based on 1H MPRAGE image. For
Δx=8mm which has a two-fold lower SNR than Δx=10mm data, Fit% is 20-40%
smaller and RMSD for ADHOC is 17% higher (Tab.2).
$$$\hspace{1cm}$$$Filtering among the neighboring pixels was beneficial:
ADHOC smoothes data among pixels with similar intensity (mostly within one
brain tissue component) and preserves borders within different tissue
compartments (edge-preservation), which is favorable compared to isotropic
homogeneous Hanning filtering. The BM constraint suppresses noise outside the head,
but barely increases SNR within the head.
CMRO2 maps from ADHOC differ from the
theoretical CMRO2 map due to the partial volume effects (PVEs). PVEs
are only partly corrected by AD reconstruction and mainly caused by fast T2*=2ms
relaxation of 17O nucleus, which leads to blurring.
Conclusions and Outlook
$$$\hspace{1cm}$$$The
results show that smoothing among neighboring pixels enables quantification of
3D CMRO
2 maps in dynamic
17O-MR experiments. Iterative
reconstructions with Anisotropic Diffusion as non-Homogeneous Constraint
(ADHOC) applied to either T
1-or T
2-based
1H images are
favorable. The reconstruction techniques will be applied for data analysis of
further dynamic
17O-MR experiments on glioblastoma patients to investigate the metabolism of different tumor regions
Acknowledgements
Support from NUKEM Isotopes Imaging GmbH is gratefully
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