Marcel Warntjes1,2, Suraj Serai3, James Leach3, and Blaise Jones3
1Center for Medical Imaging Science and Visualization, Linköping, Sweden, 2SyntheticMR AB, Linköping, Sweden, 3Department of radiology, Cincinnati, OH, United States
Synopsis
Brain
tissue properties change rapidly during the first few years of life. This poses
a problem for brain segmentation algorithms since adult tissue definitions for
white matter and grey matter do not apply for young children. An automatic
tissue cluster tracking algorithm was developed to determine WM and GM cluster
positions in a 3-dimensional search-space of quantitative R1 relaxation rate,
R2 relaxation rate and proton density. These positions are then used to segment
the brain, independent of age.Purpose
To create an algorithm that adaptively tracks the grey matter and white matter tissue properties in quantitative MRI data of longitudinal R1 relaxation rate, transverse R2 relaxation rate and proton density, in order to segment grey matter, white matter and cerebrospinal fluid volumes of the brain, independent of age.
Methods
A group
of 23 quantified datasets at 3T of paediatric clinical cases in the range 0-20
years old was used to develop an algorithm to automatically track the mean R1, R2
and PD values of GM, myelinated WM and CSF. R1, R2 and PD values were simultaneously acquired using MAGiC on a GE 750 3T system. The positions of the tissue
clusters were then used to define GM, myelinated WM and CSF partial volume. The largest contiguous volume of WM, GM and CSF was considered as the intracranial volume where the edge was refined to a PD = 50% threshold. The
sum of all partial volumes in the intracranial volume resulted in an estimation
of total GM, WM and CSF volumes of all subjects.
Results
The
observed (R1/R2/PD) values times for GM changed from (0.5s-1/6.8s-1/86%) to (0.6s-1/12s-1/86%) in the first two years of life, whereas myelinated WM changed from (0.6s-1/7.2s-1/85%)
to (1.1s-1/13s-1/72%). After two years R1, R2 and PD were relatively constant. CSF had
R1/R2/PD = 0.24s-1/0.81s-1/100% for all ages. Application of adaptive tissue cluster
tracking on GM and WM showed that myelinated WM volume, an average, increased
from 0 to 252 mL, CSF decreased from 241 mL to 40 mL and total brain volume
increased from 403 mL to 1225 mL in the first 4 years of life. In comparison to using fixed, adult cluster positions,
the estimated WM volume was significantly lower and CSF volume
was significantly higher when using adaptive cluster tracking.
Conclusions
Using adaptive tissue
cluster tracking the differences in R1 and R2 relaxation rates and proton density between young children
and adults can be corrected for, allowing fully automatic brain segmentation on all ages.
Acknowledgements
No acknowledgement found.References
No reference found.