Shubharthi Sengupta1, Ron Hellenbrand2, René Finger2, Chris Wiggins3, and Alard Roebroeck1
1Dept. of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, Maastricht, Netherlands, 2Lab Engineering & Instrumentation Department, Maastricht University, Maastricht, Netherlands, 3Scannexus, Maastricht, Netherlands
Synopsis
Small-bore animal scanners or spectroscopy systems have often been used for the investigation of small post-mortem human brain samples. These studies use the high field strengths and strong gradients, but are inherently limited to very small sample sizes. In this abstract, we discuss the acquisition of very high resolution anatomical images (100μm isotropic) of a full occipital sample as large as 80x80x80 mm3, using a customised RF receive coil-array in a large-bore 9.4 T human scanner.Introduction
Pre-clinical
MRI systems (small-bore animal scanners or spectroscopy systems) have been used
to examine small human brain tissue samples post mortem in order to investigate
fundamental neuroanatomy questions at the mesoscale
1-4. These studies take
advantage of the high field strengths and increased gradient performance of
preclinical systems, but are inherently limited to small human tissue samples
smaller than ~20x20x20mm
3, thus restricting size of the brain region examined. Extending such studies to larger samples, while maintaining optimal Signal-to Noise Ratio, requires sample-size specific RF-coils used in a large bore system
5. Previously, we showed the results of using a single-loop
RF-coil to image moderately sized specimens (~40x40x20mm
3) at high resolution using
a large-bore human 9.4 T MRI system
6. Here, we test extending high resolution
post mortem MRI to larger tissue samples by designing and building a
cylindrical phased-array receive coil (Rx) and a suitable sample holder for use
in a large-bore 9.4T system. The aim was to achieve high resolution anatomical
images for a large ~80x80x80mm
3 human occipital lobe sample, which would
be difficult to achieve either in a preclinical system due to space constraints or when using an RF-coil designed
for imaging the human brain in vivo.
Methods
The receive array consists of 16 individual coil
elements in a phased array, arranged in a 8x2 matrix around a 9 cm external
diameter hollow Polycarbonate cylinder
(
Figure 1 (L)). The coil layout allows an 80x80x80 mm
3 cylindrical imaging
volume, ideal for large tissue samples. Each
coil element is ~4.2 cm in diameter, and consists of a balun circuit along with
a tuning/matching network, in order to ensure optimised sample loading. Each coil is connected to low-noise
preamplifiers using λ/4 length coaxial cables and lumped-element networks, which also help in preamplifier
decoupling and impedance matching. Cable traps were included to help reduce any common mode current
effects, and were fashioned by winding the coaxial cable (connecting the
preamplifier to the coil plug) around a nylon screw and soldering a tuning
capacitor across its ends. The coils were all tuned and matched to 399.7 MHz,
with a loaded reflection coefficient better than -20dB for each coil element at
50 Ohms. Preamplifier decoupling for all Rx elements was better than -25dB. A separate 16 channel Tx-array coil was used as a transmit coil
7 (
Figure 1(M)).The sample holder was designed using SolidWorks and 3D printed
with SOMOS Watershed XC11122 material (DSM, Heerlen, NL), which has
susceptibility close to that of water, thus helping us reduce susceptibility
mismatch effects. The sample was preserved in Formalin and placed inside the
container, which was then sealed using a vacuum sealing paste (Dow Corning,
Michigan, USA) (
Figure 1(R)). The noise correlation for the Rx array ranged between 0.1% and 49%, with an average of 15%
(
Figure 2). Images were acquired using a Gradient Echo
sequence at 100μm isotropic (TR/TE = 19ms/7.5ms, FOV = 83.2mm, flip angle = 25˚) in an investigational 820mm bore human 9.4T magnet equipped with an
80mT/m maximum amplitude gradient set (Siemens MAGNETOM 9.4T with AC84mkII).
Results & Discussion
The high
SNR achieved resulted in 100μm isotropic anatomical
images (
Figure 3), which
show good
delineation between white and gray matter in the occipital lobe over the entire
imaging volume. We notice a slight signal drop-off towards the center of the
sample under investigation, which can be corrected with better B1+
shimming or by using
kT-points technique for a more homogeneous sample excitation.
Conclusions
We show that by using a
combination of specialized RF coils specific to a particular post-mortem tissue
sample and a high magnetic field, we can achieve very high resolution
anatomical imaging of human brain samples. Further work would include
higher resolution anatomical imaging and constructing larger receiver arrays to accommodate samples as large as
120x120x120 mm
3.
Acknowledgements
No acknowledgement found.References
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