Synopsis
To
address the shortcomings of clinical indexes for the precise identification of
prostate cancer (PC) and differentiation from benign prostatic hyperplasia
(BPH) and healthy controls (HC), we applied 1H NMR spectroscopy as a
surrogate tactic for probing of PC and BPH. The study comprises filtered sera
from PC (n=75), BPH (n=70) and the HC (n=65). NMR-measured metabolites and
clinical evaluation data were examined separately using multivariate
discriminant function analysis (DFA) to probe the signature descriptors for
each cohort. DFA reveals that filtered serum based metabolic profiling can
differentiate not only HC from BPH and PC but also BPH from PC. INTRODUCTION: Prostate cancer (PC) is the most
commonly diagnosed malignancy found in men. Conventional clinical predictors of
PC severity—digital rectal examination (DRE), serum prostate specific antigen
(PSA), trans-rectal ultrasound (TRUS), and TRUS-guided Gleason score (GS)—are
readily obtained but have inherent limitations
1-2. Reports suggest
that metabolic biomarkers may be strongly related to outcomes and morbidity in
PC episodes
3-7. However, whether the serum metabolic biomarkers may
be used for PC screening and prediction is still unknown. Hence, the following
potential research queries are still waiting to be observed: (1) Are the
filtered-serum-based metabolic biomarkers able to screen and predict BPH and
PC? (2) Is a metabolic biomarkers-based model probing better than the PSA, DRE,
and TRUS models?
MATERIALS AND METHODS: Serum PSA
levels, abnormal DRE and TRUS grades were used to evaluate all subjects.
Histopathology-based GS were executed to determine low grade (LG) or high grade
(HG) PC. A total of 210 blood samples from HC (n=65), BPH (n=70), and PC (n=75)
subjects were collected and serum was separated according to standard protocol.
Each serum samples were passed through 3kDa filters to remove copious proteins
and lipoproteins, and NMR experiments were performed on collected filtrates. A
Bruker Avance III 800 MHz spectrometer was used to execute NMR experiments
using 400 μL filtered serum samples in 5-mm NMR tubes. Trimethylsilyl propionic
acid sodium salt deuterated at CH2 groups was used for the deuterium lock,
reference, and standard signal for the quantitation of metabolites. For all the
specimens, 1D 1H NMR experiments were performed by suppression of
water resonance by pre-saturation. The parameters used were as follows:
spectral width, 16666 Hz; time domain points, 65k; relaxation delay, 10s; pulse
angle, 90
o; number of scans, 128; and line broadening, 0.3 Hz.
The statistical
significance for the NMR derived quantified metabolites (n=52) and clinical variables (serum PSA levels, DRE and TRUS grades) were compared using separate linear multivariate
discriminant function analysis (DFA) to define
important variables for differentiation of disease group (BPH+PC) from
controls, followed by discrimination between BPH and PC. DFA constructed four
separate sets of classification model such as (1) HC vs
BPH + PC, (2) HC vs BPH, (3) HC vs PC and (4) BPH vs PC. The relationship
between serum PSA levels and metabolomics derived biomarkers were also analyzed
with linear regression.
RESULTS: DFA reveals that various combinations
of glycine, sarcosine, alanine, creatine, xanthine, hypoxanthine, pyruvate,
methylhistidine, creatinine and citrate were playing major role to discriminate
all four sets of classifications. DFA between diseased prostate (BPH+PC) and HC
reveals that NMR variables based classification (86.2%) is much better then
clinical variables (68.1%). Likewise, DFA between BPH and HC discovers that NMR
variables based classification (85.9%) is much better then clinical measures
(68.1%). DFA between PC and HC reveals that NMR variables based classification
(97.1%) is much better then clinical measures (76.4%). Similarly, DFA between
BPH and PC reveals that NMR variables based classification (88.3%) is much
better then clinical measures (75.2%).
DISCUSSION: The results elucidate
the gaps of the following thoughts: (i) the filtered-serum based metabolic
biomarkers are able to screen and predict the BPH and PC and (ii) metabolic
biomarkers based model probes better than clinical variables models. Alanine
was found to be significantly higher in cell lines, serum, and biopsy tissues
of PC
5,7,8 which is consistent to our observation. Probably it is
precondition for uncontrolled cell propagation
9. Augmented level of
pyruvate in diseased prostate (BPH+PC) confirms the outcomes of an augmented
level of transamination from pyruvate to alanine, which concurs with earlier 13C
hyperpolarized and metabolomics studies
6,7. The augmented level of
sarcosine in PC agrees with the finding that the rate of glycine methylation is
much higher simultaneous dehydrogenation and that oxidation of sarcosine is
relatively lesser in PC
4,3,7. Decrease in glycine level in diseased
prostate endorses the lessening of the dehydrogenation and oxidation of
sarcosine
7. Citrate level reduction in PC concurs with the previous findings
10-13
and endorsing various possibly hypotheses
14-15. Serum creatinine and
creatine levels were correlated to the GS of PC
16 and cell
proliferation in PC
17, respectively, concurs with our observations. Carcinomatosis
and muscle protein breakdown
18-19 causes an augmented level of
3-methylhistidine in BPH and PC. Higher levels of xanthine and hypoxanthine in
BPH and PC validates that the xanthine as a diagnostic marker of PC
3,20
and hypoxanthine as a signature biomarker for non-Hodgkin’s lymphoma
21.
Regression analysis of these 10 metabolites with PSA
revealed that only the PSA vs. pyruvate, PSA vs. citrate, PSA vs.
glycine, and PSA vs. sarcosine presented significant correlation (Figure 1).
Acknowledgements
Department of Biotechnology, New Delhi, IndiaReferences
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with linear regression.