Bryant Svedin1 and Dennis L. Parker1
1University of Utah, Salt Lake City, UT, United States
Synopsis
A multi-echo pseudo-golden
angle stack of stars sequence is investigated for use in MR thermometry. High
spatial and temporal resolution is achieved through k-space filtering. PRF
temperature, T2*, ρ (signal magnituade at TE = 0), respiration correction and fat/water separation are
simultaneously measured. Use of a pseudo-golden angle increment allows for the
removal of phase (and therefore PRF temperature) artifacts due to changing
k-space sampling between reconstructed time points. k-Space sampling based phase
reference greatly improves temperature standard deviation. FUS heating
experiments are performed while simulating respiration artifacts.Purpose
Radial acquisitions offer several unique
advantages for proton resonance frequency (PRF) shift thermometry. Frequently sampling
the k-space center provides motion robust images, as well as the ability to
correct for respiration induced off resonance
1. It has been shown
that arbitrary high spatial and temporal resolution can be achieved in dynamic
MRI by acquiring successive radial spokes separated by the golden angle and
applying a sliding k-space filter, similar to the k-space weighted image
contrast (KWIC) filter
2, to the reconstruction
3. This
work investigates a pseudo-golden angle 3D multi-echo stack of stars
acquisition to simultaneously measure PRF shift temperature, T2* and ρ (signal
magnitude at TE = 0), correct respiration induced off resonance, and provide
water/fat separation with high spatial and temporal resolution.
Methods
Experiment: A 3D stack of stars spoiled GRE sequence was
modified to acquire multiple echo contrasts using a bipolar readout and a
pseudo-golden angle increment. The angle used, based on the ratio of two Fibanacci
numbers α = (1 – 233/377)*360 ≈ 137.5066, will repeat the k-space trajectory
after 377 views. Experiments were performed in an ex vivo pork phantom on a
Siemens 3T Trio scanner to assess the effectiveness of this sequence and
reconstruction technique (1.3x1.3x3 mm, FOV = 166 mm, Matrix Size = 128x128x8,
Flip Angle = 10, TR = 20 ms, 13 Echoes, TE =
2.46/3.69/4.92/6.15/7.38/8.61/8.84/11.07/12.3/ 13.53/14.76/15.99/17.22 ms). An
ambu-bag with two 1 liter saline bags, placed above the phantom, was manually inflated
periodically to simulate respiration artifacts. The phantom was sonicated with
focused ultrasound (FUS) with 125 electric Watts for 30 seconds while imaging.
Four sets of data were collected. Two image sets were acquired without manually
simulated respiration or FUS. The first set served as a control. The second
provided a baseline of the FUS heating without the respiration artifact. The
third and fourth image sets repeated sets one and two while manually simulating
respiration.
Reconstruction: The center
of k-space was corrected with the method described by (4) using the first and
second echoes of each view to calculate the pixel shift needed. The slope of
the phase at the center of k-space was used for respiration correction1.
Data was then reconstructed using a sliding filter with 13 innermost lines,
with each successive ring using the minimum number of lines to meet the Nyquist
criteria, using 377 lines in the outermost ring. The sliding window was
advanced 13 views between each reconstruction time point providing a temporal
resolution of 1.56 seconds. The k-space sampling pattern was repeated after 29 reconstructed
time points. PRF temperatures were calculated using both the first time point and
the time point with the same k-space sampling pattern as the reference phase.
T2*/ρ maps were calculated using linear regression of the log of the magnitude
images along the echo dimension. Water and fat images were produced using the
three point Dixon method with the second, third and fourth echoes.
Results
Figure 1 shows the water and fat images produced
from the sequence. Figure 2 shows the slope of the phase change through the
center of k-space induced by simulated respiration. Figure 3 shows the measured
PRF temperature change in an example aqueous tissue voxel for the respiration
non-heating case. Data is displayed with and without respiration correction and
using the 1st image as the reference phase as well as a sampling
pattern based phase reference. Figure 4 shows the standard deviation through
time images of the PRF temperature measurements for the same cases as Figure 3.
Figures 5a, b and c show the PRF temperature, ρ and T2* values vs time of the
hottest voxel while heating with FUS. PRF temperature is shown using both the
first image as the phase reference and a sampling pattern based phase reference
to calculate the temperature difference.
Discussion, and Conclusions
All measurements display a structured artifact
based on the k-space sampling pattern used for reconstruction. For this reason,
a pseudo and not pure golden angle increment was chosen to cause the artifact
to repeat and thus be removable in temperature difference measurements. The
method shown here provides promising results for this sequence and
reconstruction method for use in free breathing interventional treatments. The
respiration correction method also corrects for main field drift. The high
bandwidth multi-echo readout removes the need for fat saturation as well as
provides T2*/ρ measurements, which could be used as another possible measure of
temperature change, especially in adipose tissue which does not exhibit a PRF
shift with temperature
5.
Acknowledgements
Funding
Sources: NIH
R01 EB013433, CA 172787References
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