Lars Kasper1,2, Christoph Barmet1,3, Maria Engel1, Maximilian Haeberlin1, Bertram J Wilm1, Benjamin E Dietrich1, Thomas Schmid1, David O Brunner1, Klaas E Stephan2,4,5, and Klaas P Pruessmann1
1Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Zuerich, Switzerland, 2Translational Neuromodeling Unit, IBT, University of Zurich and ETH Zurich, Zuerich, Switzerland, 3Skope Magnetic Resonance Technologies, Zurich, Switzerland, 4Wellcome Trust Centre for Neuroimaging, University College London, London, United Kingdom, 5Max Planck Institute for Metabolism Research, Cologne, Germany
Synopsis
We present whole-brain, high-resolution (0.5mm) spiral
imaging with proton-density and T2* contrast at 7T in less than a minute. Owing
to a comprehensive characterization of the imaging process, artifact-free image
reconstruction from long-readout spiral shots (20 ms) becomes feasible via an iterative SENSE algorithm.
In particular, trajectory imperfections as well as dynamic off-resonance
changes are captured via concurrent field monitoring, while static off-resonance
as well as coil sensitivities are mapped in a multi-echo reference scan and augment
image reconstruction. The resulting images exhibit the same geometric fidelity as
spin-warp images at a fraction of the total acquisition duration.Introduction
Ultra-high
field MRI holds considerable promise for advanced diagnostic imaging due to its
unique contrast properties and high baseline sensitivity. This superior
sensitivity enables shorter scans and can be traded for higher spatial or
temporal resolution.
In
practice, however, many high-field protocols make grossly inefficient use of
the available sensitivity. Cause are high-field specific conditions (SAR
limitations, long T1/short T2) that enforce lengthy repetition times, in
combination with short readouts. In the ensuing small acquisition duty cycle
the superior high-field sensitivity is squandered. To leverage high-field
imaging, full use must be made of the available acquisition windows, as can be
achieved with efficient and long k-space readouts.
In this
work, 7T anatomical whole-brain imaging in under 1 minute is shown, presenting
a 5-10 fold scan time reduction as compared to conventional readouts. To this
end, spiral acquisitions are used, combining efficient k-space readouts with
flexible acquisition times. Impeccable image quality is achieved by controlling
for physiology- and system-induced encoding field imperfection, combining iterative,
off-resonance-map-based image reconstruction with concurrent magnetic field
monitoring (Fig. 1, [1]).
Methods
SETUP:
The brains of 3 healthy volunteers were scanned on a 7T system (Philips
Achieva, Best), using a 1-channel transmit, 32-channel receive coil (Nova
Medical, Wilmington). 16 NMR field probes were placed in optimal positions (cf.
below) around the receive (and inside the transmit) coil using a clip mount
system and connected to a dedicated MR acquisition system [2].
SEQUENCE
AND TRAJECTORIES:
For
the anatomical scans, a set of multi-slice sequences was designed utilizing
spiral readouts, which achieved time optimality by fully exploiting the
system’s slew-rate and gradient strength limits [3]. The selected sequences covered
different contrasts (PD/T2*; spiral in/out) and timing constraints (36-90s
total duration, see Fig. 2 for details), but shared slice geometry (thickness 1.5-3mm;
-10 deg tilt oblique transverse). A multi-slice 2D setup allowed for
whole-brain coverage by slice-interleaved acquisition of up to 50 slices within
one TR (3s).
For
determining the sensitivity and off-resonance maps, a spin-warp multi-echo sequence
(delta TE 1ms) was acquired with identical slice geometry, but 1mm in-plane resolution.
In
all scans the field probes were excited before the start of the readout trajectory
and sampled with 1MHz bandwidth during the readout. MR signals from the
head-coil were acquired via the scanner spectrometer.
SIGNAL
PROCESSING AND IMAGE RECONSTRUCTION (Fig. 1):
For
every time point during the imaging readout, 16 k-space coefficients (k0-k15)
– corresponding to a real-valued spherical harmonic basis function set up to 3rd
order – were computed from the probe signals. To minimize error in the
measurements of the encoding dynamic fields, the probe positions were chosen
such as to reduce the error in the fitted k-space coefficients [4,5] , respecting the coil geometry.
On the coil raw data, an iterative, CG-based
image reconstruction was performed (SENSE with multi-frequency interpolation, [6,7]). For the encoding model, the measured field
dynamics up to first order (k0-k3) were used, in combination with the
sensitivity- and static off-resonance maps [8,9], which were smoothed via a CG algorithm.
Results
Field
evolutions during spiral encoding of several tens of ms could be successfully
monitored (Fig.
3). Combined with static B0 off-resonance maps, virtually artifact-free T2* spiral-out images (Fig.4) could be reconstructed from multiple slices and volunteers, exhibiting both high contrast-to-noise ratio (CNR) and resolution (0.5mm). Furthermore, the geometric congruence of the images with the undistorted multi-echo spin-warp reference scan was confirmed for all proposed spirals (Fig. 5). Total acquisition durations of 90s were sufficient for convincing 0.5mm resolution images. Slight reduction in resolution (0.7mm) enabled sub-minute scan time. Alternatively, a SENSE reconstruction (R=2) with half of the interleaves of a 0.5 mm spiral-out trajectories succeeded, enabling a flexible trade-off between CNR and scan time.
Discussion & Conclusion
Oftentimes poor use is made of the sensitivity available in
ultra-high field imaging, resulting in lengthy scan protocols, particularly for
high-resolution scans. Spiral readouts with optimal acquisition windows provide a powerful remedy, if the image reconstruction is performed on the actual encoding fields (monitored k-trajectory, static
off-resonance and sensitivity maps). Anatomical whole brain coverage is shown
in a sub-minute scan with image quality identical to conventional spin-warp
acquisitions. Proton-density (TE 3ms) as well as a T2*-weighted contrast is
shown, the latter coming in two flavors: outside-in and inside-out spirals.
Spiral imaging is suitable to other ultra-high field
applications. As single-shot readout for fMRI, ASL, fQSM, and in multi-shot
acquisitions for angiography, susceptibility imaging and different anatomical
contrasts. Optimized spiral trajectories such as variable density spirals have
the potential of further increasing imaging speed and image SNR, leveraging the
superb sensitivity of ultra-high field MRI.
Acknowledgements
No acknowledgement found.References
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