Synopsis
Björk et al. proposed to use the balanced steady-state
free precession (bSSFP) pulse sequence with multiple phase-cycled acquisitions
to estimate the values of T1
and T2 using a non-linear fitting approach. Unfortunately, they
found that this non-linear approach would face large uncertainties for
realistic SNRs. The purpose of our work was to demonstrate that by
reformulating the signal model in the complex plane, an elliptical model can be
fitted to the data points using a linear least squares method , allowing for
more robust, accurate and simultaneous estimation of
T1 and T2 values.Target audience
Scientists who are
interested in quantitative MRI.
Purpose
The balanced steady-state free precession (bSSFP) pulse
sequence with multiple phase-cycled acquisitions was introduced to minimize
banding artifacts (1).
Björk et al. (2) extended this work by exploring the
possibility to estimate T1 and T2 from
phase-cycled acquisitions using non-linear fitting. They concluded that the technique would face large uncertainties for realistic SNRs.
Our purpose was to demonstrate that by reformulating
the signal model in the complex plane, an elliptical model (3) can be fitted to
the data points using a linear least squares method (4) and that a subsequent analytical
solution for T1 and T2 exists. This transforms the reconstruction into a convex
problem allowing for more robust, accurate and simultaneous estimation of T1
and T2 values.
Methods
The complex bSSFP signal S can be represented as:
$$$S=M\frac{1-ae^{i\theta}}{1-b\cos\theta}$$$ [1],
where $$$M=\frac{M_{0,eff}(1-E_{1})\sin\alpha}{1-E_{1}\cos\alpha-E_2^2(E_{1}-\cos\alpha)}$$$;$$$a=E_{2}$$$; $$$b=\frac{E_{2}(1-E_{1})(1+\cos\alpha)}{1-E_{1}\cos\alpha-E_2^2(E_{1}-\cos\alpha)}$$$;$$$E_{1}=\exp(\frac{-TR}{T_{1}})$$$;$$$E_{2}=\exp(\frac{-TR}{T_{2}})$$$
M0,eff is the effective equilibrium magnetization, α the flip angle, TR the repetition time, θ the resonance offset angle,
θ = θ0+∆θ, θ0 is
proportional to off-resonance frequency, ∆θ
is user-controlled RF phase increment.
Equation 1 describes an ellipse in the complex plane. By
fitting an ellipse to the set of data points acquired with different settings
of the phase increment, T1 and T2 can in
principle be retrieved. We propose the following approach:
First, the general second order polynomial
representation of an ellipse, $$$Ax^{2}+Bxy+Cy^{2}+Dx+Ey+F=0$$$,
is fitted to the measured data using the direct linear
least-squares fitting method, specific to ellipses (4). Since there are 6
unknowns, we need at least 6 data points, which corresponds to acquiring data
with at least 6 different phase increment settings.
From the polynomial representation we have derived the
conic equation of the ellipse and found the geometric center and semi-axes, which
are related to parameters M, a, b through a system of nonlinear equations, which we have solved analytically. The
T1 and T2 estimates can be found from a and b using:
$$$E_{1}=\frac{a(1+\cos\alpha-ab\cos\alpha)-b}{a(1+\cos\alpha-ab)-b\cos\alpha}$$$; $$$E_{2}=a$$$; $$$T_{1}=\frac{-TR}{\ln(E_{1})}$$$; $$$T_{2}=\frac{-TR}{\ln(E_{2})}$$$
Unlike T2 estimates, T1
estimates depend on α. Therefore the obtained T1 maps were
calculated after a correction for spatial flip angle variations using an additionally
acquired B1-field map.
To investigate the performance of the proposed approach,
MRI experiments were performed on a clinical 1.5T MR scanner (Philips Achieva,
Best, The Netherlands) using a phantom consisting of gel tubes with calibrated
T1 and T2 values (TO5, Eurospin II test system, Scotland). T1 and
T2 values of the gels were corrected for scanner room temperatures. Tubes were chosen with relaxation times in the range of human
body tissues. An 8-channel head coil was used as a receive coil. The mean T1 and T2
values of 4 tubes placed close to the center of the phantom were calculated
by averaging over an ROI inside the tubes on the T1 and T2
maps, after B1-field correction, for 3 slices in the center of the
phantom.
Sequences parameter settings: 3D bSSFP, FOV 200x200x100mm3,
voxel size 1.5x1.5x2mm3, TR 6.9 ms, TE 3.45 ms, NSA 2, α 45°, 10 phase cycles, ∆θ π/5.
Reference T1 and T2 values were
calculated using a standard combined inversion recovery (for T1) and
multi echo SE (for T2) sequence provided by the scanner manufacturer
(5).
Results
Figure 1 provides an example of ellipses fitted to
data points from two voxels inside tubes with different T1
and T2 combinations, acquired using 10 phase increment steps.
Figure 2 presents T1 and T2
maps, calculated for the phantom.
Figure 3 shows a comparison between tabulated
relaxation times, those measured using reference sequence, and those calculated from
our elliptical model for 4 different tubes near the center of the phantom. Standard
deviations are presented in error bars.
Discussion and conclusion
We have demonstrated that direct least-squares ellipse
fitting to phase-cycled bSSFP data allows the simultaneous estimation of
relaxation parameters T
1 and T
2 from the same scan in a
robust and fast manner. This is a clear advantage of this method compared to
standard DESPOT1&2 methods, which require scanning using two different
sequences. Reformulating the signal model in the complex plane allowed us to
fit the ellipse directly using a linear least-squares method, which makes
reconstruction time-efficient and avoids problems related to local minima
associated with iterative fitting methods in the presence of noise. Contrary to
Bjork et al., we foresee good potential for phase-cycled bSSFP imaging for
simultaneous T
1 and T
2 mapping. Our future work will
include a more detailed study of the precision and accuracy of the method in
relation to the SNR. Furthermore we will optimize scan parameters to
allow applications
in vivo.
Acknowledgements
No acknowledgement found.References
[1] N.K. Bangerter, B.A. Hargreaves et al. MRM 51
(2004); [2] M.Björk et al. MRM 72 (2014); [3] Q-S Xiang, M.N. Hoff MRM 71
(2014); [4] A.W. Fitzgibbon et al. TPAMI, Vol 21, 5 (1999); [5] J.J In den Kleef, J.J
Cuppen MRM 5(6) (1987)