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Unveiling the Dispersion Kernel in DSC-MRI by Means of Dispersion-Compliant Bases and Control Point Interpolation Techniques
Marco Pizzolato1, Rutger Fick1, Timothé Boutelier2, and Rachid Deriche1

1Athena Project-Team, Inria Sophia Antipolis - Méditerranée, Sophia Antipolis, France, 2Olea Medical, La Ciotat, France

Synopsis

In DSC-MRI the presence of dispersion affects the estimation, via deconvolution, of the residue function that characterizes the perfusion in each voxel. Dispersion is described by a Vascular Transport Function (VTF) which knowledge is essential to recover a dispersion-free residue function. State-of-the-art techniques aim at characterizing the VTF but assume a specific shape for it, which in reality is unknown. We propose to estimate the residue function without assumptions by means of Dispersion-Compliant Bases (DCB). We use these results to find which VTF model better describes the in-vivo data for each tissue type by means of control point interpolation approaches.

Purpose

To assess in-vivo which vascular transfer function (VTF) better describes the brain vascular dynamic in DSC-MRI.

Introduction

Dispersion is a physiological phenomenon present in DSC-MRI data and its characterization is fundamental to assess the reliability of hemodynamic parameters while potentially revealing pathological conditions1. Dispersion affects the time-dependent residual amount of tracer R(t) calculated for each voxel via deconvolution of the measured arterial Ca(t) and tissular Cts(t) concentrations2,3. Mathematically the computed effective residual amount is represented as the convolution Reff(t)=RVTF(t), where VTF(t) is the probability density of the transit times t from the arterial measurement location to the voxel where Cts(t) is measured. A recent state-of-the-art technique4, henceforth CPI+GDK, disentangles the contributions of VTF and R(t) by estimating a set of control points whose interpolation is convolved to a gamma dispersion kernel (GDK) that is assumed as model for the VTF GDK(t,s,p)=s1+spΓ(1+sp)tspest where s,p are unknown. However the true shape of VTF is unknown, therefore the GDK assumption may not be true.

We propose instead to perform deconvolution with Dispersion-Compliant Bases5 (DCB) which make no assumptions on the VTF. We then implement variants of CPI+GDK for the well-known exponential (CPI+EDK) and log-normal (CPI+LNDK) dispersion kernels4, to see which one among the three better describes the DCB results in-vivo. We finally obtain maps of the brain showing for each voxel what is the dispersion kernel that better describes the data.

Methods

We perform DCB deconvolution on a sampling grid t1,t2,..,tM representing the effective R(t) as5 ReffDCB(t)=Θ(tτ)Nn=1[an+bn(tτ)]eαn(tτ) with order N, and τ,an,bn unknown with αn predefined5. Differently from literature the solution is constrained via quadratic programming to ReffDCB(tm)0tm[t1,tM1], and ReffDCB(tM)=0. N=6 was found sufficient.

For the CPI-based deconvolution we extend CPI+GDK4 by substituting the VTF model with an exponential (EDK) and a lognormal (LNDK) kernels which are often considered in literature4 EDK(t,θ)=1θe1θ LNDK(t,μ,σ)=1tσ2πe(ln(t)μ)22σ2 where θ,μ,σ are unknowns. The CPI+GDK was implemented as in literature4 with 12 control points and initial parameters p,s for the optimization routine log2±2 (mean±SD). Similarly the CPI+EDK and CPI+LNDK were initialized with β=1s±2s and μ=1±1,σ=1±1, which corresponds to low dispersion4. Non-linear estimation was performed bounding parameters to mean±3SD. We then proceed with two steps.

1. We perform synthetic experiments showing that DCB deconvolution performs comparably or better than CPI+GDK/EDK/LNDK when the ground truth dispersion kernel is GDK, EDK or LNDK respectively. Data was generated according to literature2,5 with SNR=504. We tested three dispersion levels low, medium, high4, BF[5:10:65]ml/100g/min, MTT[2:4:18]s, delay[0,5]s4 (100 repetitions for each combination).

2. We apply DCB deconvolution on stroke MRI data to obtain the estimated ReffDCB(t) for each voxel; we calculate the re-convolution Cts(t)=CaReffDCB(t); we perform deconvolution with the three CPI+ techniques on Ca(t) and Cts(t) obtaining ReffGDK(t), ReffEDK(t) and ReffLNDK(t); for each voxel we select the CPI+ technique providing the lowest l2 reconstruction error of Cts(t), and the best estimates of the effective blood flow BFeff (Reff(t) peak) and mean transit time MTTeff=(BloodVolume)/BFeff compared to DCB results.

Results

Synthetic results in Fig. 1 show the comparisons of DCB with CPI+GDK/EDK/LNDK when the dispersion kernels are respectively GDK, EDK and LNDK. We note that MTTeff,BFeff estimates with DCB have lower or similar relative error. Results on real data in Fig. 2 show the clustering of a slice where each pixel is colored according to the CPI+ technique that better reproduces MTTeff,BFeff obtained with DCB and the l2 reconstruction error. Fig. 3 reports the BFeff DCB-based map, which unveils an infarcted region in the right hemisphere.

Discussion

In-vivo results show that the presence of the GDK, EDK, LNDK dispersion kernels is widespread in the brain. Each clustered region looks structured and remains homogeneous among the tested parameters (see Fig.2 “all”). We note that the three dispersion kernels seem linked to as many tissue areas/types. Moreover GDK is mainly present in the infarcted region (see right hemisphere in Fig. 3). Synthetic results (Fig. 1) demonstrate that DCB allow to perform reliable deconvolution without assumptions on the shape of VTF. At the same time the use of DCB opens for a-posteriori VTF characterization, for instance with the three CPI+ based techniques.

Conclusion

We present results suggesting that different brain regions and tissue conditions support different descriptions of the underlying dispersion kernel (VTF), highlighting the need of estimating the effective residue amount of tracer Reff(t) without a-priori assumptions on the VTF, that is the case of DCB deconvolution5. We further believe that successive dispersion kernel detection and characterization based on VTF models can constitute a new bio-marker to shed light on the tissue vascular dynamic.

Acknowledgements

We thank Olea Medical and the PACA Regional Council for providing grant and support.

References

1. Willats et al., “Improved deconvolution of perfusion mri data in the presence of bolus delay and dispersion,” Magn Reson Med, vol. 56, pp. 146156, 2006.

2. Calamante et al., “Delay and dispersion effects in dynamic susceptibility contrast mri: simulations using singular value decomposition,” Magn Reson Med, vol. 44(3), pp. 466–473, 2000.

3. Calamante et al., “Estimation of bolus dispersion effects in perfusion mri using image-based computational fluid dynamics,” NeuroImage, vol. 19, pp. 341–353, 2003.

4. Mehndiratta et al., “Modeling and correction of bolus dispersion effects in dynamic susceptibility contrast mri: Dispersion correction with cpi in dsc-mri,” Magn Reson Med, vol. 72, pp. 17621774, 2013.

5. Pizzolato et al., “Perfusion mri deconvolution with delay estimation and non-negativity constraints,” in 12th International Symposium on Biomedical Imaging (ISBI). IEEE, 2015, pp. 1073–1076.

Figures

Relative errors (mean,sd) of estimates of effective blood flow BFeff calculated as the peak of Reff(t), and mean transit time calculated as the ratio MTTeff=BV/BFeff where BV is the computed blood volume5. Error in estimating the time-distance between the beginning of Reff(t) and its peak, T2MAX is also reported.

Best dispersion kernel based on DCB deconvolution. For each parameter, among BFeff, MTTeff and l2 error, a pixel is colored according to the model-based technique that better describes DCB results among CPI+GDK4 (green), CPI+EDK (red) and CPI+LNDK (blue). The "all" map shows the intersection of the results.

Effective cerebral blood flow BFeff (ml/100g/min) calculated from deconvolution by means of Dispersion-Compliant Bases5 (DCB) on stroke MRI data. The right hemisphere shows an infarcted region characterized by low values whereas the surrounding tissue is iso-perfused. We note that the infarcted region visually correlates with GDK results in Fig. 2.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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