Irati Markuerkiaga1 and David G. Norris1
1Donders Institute, Nijmegen, Netherlands
Synopsis
The specificity of GE-BOLD profiles is suspected to be degraded by intracortical veins. In this work experimentally obtained GE-BOLD profiles for different subjects are deconvolved with a laminar point spread functions obtained from a model of cortical vasculature. The obtained underlying activation profiles are closer to the activity profiles expected from electrophysiology for the type of stimulus used.Purpose
Intracortical
veins are suspected to degrade the laminar specificity of the Gradient Echo
blood oxygenation level dependent (GE-BOLD) signal as they propagate the BOLD
signal from lower layers to upper layers on their way to the pial veins. To
overcome this lack of spatial specificity, the laminar point spread function (PSF)
of the GE-BOLD signal could be used to deconvolve the measured profiles or in a
forward model to obtain the underlying activation pattern across the cortex.
In this
work, experimental BOLD profiles at various echoes are deconvolved with the
corresponding laminar PSFs calculated from a vascular model to obtain the underlying activation profiles.
Methods
Five
subjects were scanned at a 7T Siemens
scanner after informed consent was given. The functional scan used was a mutliecho
3D-FLASH sequence, with a 0.75 mm isotropic voxel size and 91s volume TR. The
paradigm consisted of ten black screens interleaved with nine stimulus blocks
of a flickering checkerboard at 7.5 Hz (see Koopmans et al 2011 for a thorough
description). The average BOLD profiles across subjects are shown in Figure 1.
The laminar
PSFs were obtained in the following way: a vascular model of the primary visual
cortex was developed following mainly histological observation in primates (Markuerkiaga
et al 2014) and BOLD profiles could be predicted across the cortex making use
of the BOLD signal model and relaxation parameters as proposed by Uludag et al 2009.
This way, the laminar point spread function was calculated at 7 T for the echo
times used in the experimental acquisition (Figure 2). The PSF is skewed
towards the surface, it presents a peak in the activated layer and a rather
flat plateau, which is helpful for the following deconvolution step.
The
acquired BOLD profiles, Y, can ideally be obtained as the multiplication of a
matrix consisting of the laminar PSFs, X, and the laminar activation strength
across the cortex, β: Y=
X*β Hence, the
activation patterns, β, is given by calculating
X-1 *Y. In order to obtain more robust results against
noise, a smoothness constraint was added to the transition of the activation strength
between adjacent cortical depths. As the vascular model does not consider pial
veins, which have an effect on the BOLD signal in the most superficial layer
both by partial voluming and long ranging extravascular relaxation, BOLD signal
in layer I (250 um below the pial surface), was excluded for the calculation of
the activation through the cortex.
Results
The underlying
activation profiles across echoes obtained are largely consistent for each of
the subjects (Figure 3). In general, they show a stronger activation around the middle of
the cortex compared to the lower and upper layers. The differences in the relative
magnitude of the activation between subjects may be due to physiological differences
between them.
Discussion
Intense and
non-demanding visual stimuli are expected to generate a stronger activation in
the granular layer, as it receives the input from the LGN(Bissig et al
2009). Due to the carry over effect through intracortical veins, the magnitude
of the laminar GE-BOLD does not reflect this effect (Figure 1). The
deconvolution of GE-BOLD profiles with the calculated laminar PSFs yields more
realistic underlying activation patterns.
For a given
subject, the underlying activation is constant across echoes, and the activation
profiles obtained are, as expected, consistent through the different echoes in
all subjects.
To conclude,
the results shown here indicate that the use of prior knowledge about the BOLD
PSF can improve the spatial resolution of GE-BOLD signal, while retaining its
high sensitivity. Future work will be aimed at validating this approach in an
independent set of BOLD profiles obtained under a different stimulus condition
and/or field strengths.
Acknowledgements
This
work was supported by the Initial Training Network, HiMR, funded by the
FP7 Marie Curie Actions of the European Commission
(FP7-PEOPLE-2012-ITN-316716)References
1.Koopmans,et.al,Neuroimage(2011),56:1276-85;
2.Markuerkiaga,et.al,Proc.Intl.Soc.Mag.Reson.Med(2014);
3.Uludag,et.al, Neuroimage(2009),48:150-65;
4.Bissig,et.al, Neuroimage(2009),44:627-35