Synopsis
Wave-CAIPI utilizes additional gradients
during the readout to improve controlled aliasing and fully harness coil sensitivity
encoding. Recently proposed CS-Wave extended Wave-encoding with Poisson
sampling and wavelet regularization. This work proposes optimized CS-Wave with i)
tailored data-sampling and ii) highly efficient reconstruction. At 15-fold acceleration,
proposed CS-Wave provides 20% RMSE improvement over Wave-CAIPI, which nearly doubles
the improvement achieved with previously proposed CS-Wave. This permits single
head-orientation Quantitative Susceptibility Mapping at 1×1×2mm3 resolution in 25s.
Combining CS-Wave with SMS Echo-Shift strategy further increases the
acceleration to 30-fold, thus enabling multi-orientation QSM at long-TE from
three head-rotations at 1.5mm isotropic in 72s.Purpose
Wave-CAIPI utilizes sinusoidal gradients during each readout period to
traverse a corkscrew trajectory and spreads aliasing in all spatial directions.
This allows 10-fold acceleration in 3D (1,2) and Simultaneous MultiSlice (SMS) imaging (3) with low image artifacts. CS-Wave
was recently proposed (4), which extended Wave-encoding through Poisson sampling and wavelet
regularization to achieve further accelerations. In this work, we propose an optimized
CS-Wave with hybrid sampling that synergistically combines controlled aliasing at low
spatial frequencies with incoherent aliasing at high frequencies. This is
inspired by the performance gain of hybrid undersampling in (5). Additionally,
efficient reconstruction via variable splitting of consistency and
regularization terms is developed. At 15-fold acceleration, proposed CS-Wave
provides 20% RMSE improvement over Wave-CAIPI, which nearly doubles the
improvement from previous CS-Wave approach. This permits whole-brain QSM at 1×1×2mm
3 resolution in 25s. CS-Wave is also combined with SMS Echo-Shift (6,7) to achieve further increase in acceleration to
30-fold by minimizing sequence dead-time, thus enabling
multi-orientation QSM at 1.5mm isotropic resolution in 72s.
Efficient Reconstruction
Despite following a non-Cartesian trajectory, Wave encoding
can be expressed in Cartesian k-space through point spread function (psf)
formalism: k = MFyzPFxSm,
where k is the k-space data, M represents hybrid undersampling, Fyz and Fx
denote Fourier transforms along ky-kz and kx. P is the psf in hybrid (kx,y,z)
space, S are the coil sensitivities,
and m is the unknown image.
Regularization is incorporated via
1/2||MFyzPFxSm – k||22 + λ||Rm||1
where R is wavelet or
gradient operator. By introducing auxiliary variables c = FyzPFxSm, and r = Rm, and applying ADMM (8,9), closed-form updates are obtained:
c = (M+αI)–1·[Mk + α(FyzPFxSm+dc)]
r = max(|Rm+dr|–λ/β, 0)·sign(Rm+dr)
where dc and dr are dual variables, and α and β are Lagrangian parameters. Image update is
found by solving
(αSHS+βRHR)m = αSHFxHPHFyzH(c–dc) + βRH(r–dr)
This system can be inverted in closed-form for wavelet transform where RHR = I, and solved for gradient transform (TV) using conjugate gradient with the diagonal preconditioner (SHS+6βI)–1.
Data Acquisition
(i)
3D-GRE Wave data were acquired at 3T and 7T using 32-channel receiver with parameters:
matrix=224×222×120, resolution=1×1×2mm3. For 3T: TE/TR=13.3/26ms, and for 7T: TE/TR=10.9/27ms.
(ii) SMS Echo-Shift Wave data were
acquired at 3T, where 2-fold improvement in encoding efficiency is achieved by
echo-shifting even and odd slices data to minimize dead-time from long-TE. Resolution was 1.5mm isotropic with matrix=160×160×96, TE/TR=35/47ms. Three
volumes were collected at different head orientations.
Data Reconstruction
For fast computation, SVD coil compression was
applied (10). ESPIRiT
calibration (11) from the center
16×16×16 k-space was
employed for coil sensitivity estimation.
(i) 3D-GRE Wave data: were
retrospectively undersampled using
i)
Wave-CAIPI under-sampling at R=5×3,
ii) Poisson CS-Wave sampling
at R=15 (4),
and
iii)
Proposed hybrid CS-Wave
sampling with controlled aliasing at R=3×3 in central 25% k-space and variable-density
Poisson mask (12) at outer k-space for R=15-fold total
acceleration (Fig.1).
Generalized
SENSE was used for Wave-CAIPI reconstruction (1,13) and proposed
efficient algorithm was employed for CS-Wave reconstruction.
(ii) Echo-Shift Wave data:
were undersampled to provide 30-fold total acceleration (Rcs-wave×Recho-shift=15×2)
and reconstructed using proposed algorithm.
Phase & QSM
processing
Phase data were processed
with BET brain-masking (14), Laplacian unwrapping (15), and harmonic background removal (16,17) to obtain the tissue phase.
(i) QSM
for 3D-GRE: employed single-step reconstruction that directly relates the
unwrapped phase to the underlying susceptibility via TV regularization.
(ii) QSM for Echo-Shift: combined
complementary information in phase images from 3-directions using COSMOS (18), thus obviating the need for
regularization.
Results
Fig.1 compares proposed CS-Wave and Wave-CAIPI at 7T. RMSEs were
8.6% for CS-Wave with TV-penalty and hybrid sampling (9.1% with previously
proposed wavelet and Poisson sampling, not shown) and 10.2% for Wave-CAIPI.
Fig.2 shows 3T results, where the RMSEs were 7.4% for proposed
CS-Wave with TV-penalty and hybrid sampling (7.9% with wavelet and Poisson), and 8.9% for Wave-CAIPI. Processing times in Matlab were
8.4min for TV-regularized CS-Wave (3.8min using wavelet) and 1.8min for
Wave-CAIPI.
Figs.3&4 demonstrate tissue phase and QSM images, derived
from these accelerated 3D-GRE reconstructions.
Fig.5 presents Echo-Shift CS-Wave reconstructions at 3-orientations, and high quality QSM and phase images.
Discussion &
Conclusion
The
proposed CS-Wave enables improved mitigation of artifacts and noise
amplification. This was made possible by efficient ADMM reconstruction, and
hybrid sampling that simultaneously accommodates sensitivity encoding and
sparsity prior. Compared to previous CS-Wave that achieves 12% improvement over
Wave-CAIPI, proposed strategy attains 20% RMSE reduction. This leads to improved
phase and QSM from single-orientation at 1×1×2mm
3
resolution in 25s. Combining CS-Wave with Echo-Shift permits 30-fold
acceleration for multi-orientation QSM, enabling a 72s protocol with 3-rotations.
Future work will explore complementary sampling across
orientations with joint reconstruction for further gain.
Acknowledgements
NIH NIBIB P41-EB015896, 1U01MH093765, R24MH106096, 1R01EB01943701A1References
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