Towards High Resolution Chemical Shift Imaging of the Lungs using Hyperpolarized Carbon-13
Mehrdad Pourfathi1,2, Stephen J. Kadlecek1, Harrilla Profka1, Sarmad M. Siddiqui1,3, Heather Gatens1, and Rahim R. Rizi1

1Radiology, University of Pennsylvania, Philadelphia, PA, United States, 2Electrical and Systems Engineering, University of Pennsylvania, Philadelphia, PA, United States, 3Bioengineering, University of Pennsylvania, Philadelphia, PA, United States

Synopsis

We present the utility of a under-sampled single-shot turbo spin-echo (TSE) sequence for high resolution T2 mapping and imaging of the lungs using hyperpolarized carbon-13 agents. We then demonstrate the possibility of using this sequence selectivity excite different carbon-13 species via a minimum-phase frequency-selective excitation pulse.

Introduction

Lung MRI suffers from low tissue density and severe field inhomogeneity due to the air-tissue interface, resulting in prohibitively short T2* relaxation times [1]. However, the reported T2 relaxation time constants in the lungs are considerably longer [2]. In this study, we demonstrate the utility of a modified under-sampled single-shot turbo spin-echo (TSE) for carbon-13 hyperpolarized MRI of the lungs. The sequence exploits long T2 relaxation times to obtain high-resolution carbon-13 images. Although a similar approach has been used for HP-MRI of the lungs [3], we aim to investigate the utility of single-shot TSE sequence for chemical shift imaging. First, we measured the T2 relaxation time of carbon-13 in the lungs using a dual-echo single-shot TSE sequence. Then, we used a higher-resolution single-echo sequence to obtain dynamic high-resolution images. Finally, we demonstrated the applicability of this sequence to obtaining chemical shift images using selective excitation in a phantom.

Materials and Methods

Eight BLAB/c mice (25 ± 2 g) were imaged for the in vivo studies. A venous tail vein catheter was placed and mice were placed in a 9.4T vertical-bore (Bruker Inc.) micro-imaging MRI system. All images were acquired using a 25mm 1H/13C saddle-coil (Bruker Inc.). Respiration was monitored using a respiration cushion. Proton T2-weighted images were acquired over the lungs using a respiratory-gated multi-slice fast spin-echo (FSE) sequence (TR/TE=570/2.3ms, ETL=4, NA=9, 192x192 voxels). 45µL of [1-13C]-pyruvate (Cambridge Isotopes) was polarized using a HyperSense DNP polarizer (Oxford Instruments) to over 15%. The sample was melted using a dissolution buffer (40mM Trizma, 160mM NaOH, 50mM NaCl, 0.1g/L EDTA) at 180°C to yield an isotonic solution of 160mM [1-13C]-pyruvate with neutral pH at 37°C. Ten seconds after the dissolution a 350µL aliquot was injected through the tail-vein over 12 seconds. Carbon-13 imaging was performed using a single or dual-echo under-sampled single-shot TSE sequence (partial fourier=1.68) with an outwards centric phase encoding table. For the in-vivo studies, a 1ms SLR excitation/flip-back pulses (α=90°) and 0.5ms adiabatic refocusing pulses (α=180°) were used. Four mice were imaged using the dual-echo version of the sequence (TE1/TE2=2.98/50.66ms, 32x32 voxels, BW=40KHz, in-plane FOV=25x25mm2 and 10mm slice thickness) for T2 mapping and optimizing the timing of the high resolution sequence (Figure 1). The other four mice were imaged using a higher resolution version of the sequence (TE=2.3ms, 48x48 voxels, BW=40KHz, in-plane FOV=25x25mm2 3mm slice thickness). Six images were acquired every 5 seconds (Figures 2 and 3). To demonstrate the feasibility of chemical shift imaging a phantom consisting of three 5 mm tubes containing (1) 1.5M [1-13C]-glycine, (2) [1-13C]-sodium propionate and (3) a mixture of both was used (Figure 4). A modified single-echo single-shot TSE sequence (TE=9.42ms, echo-spacing = 4.11ms, 48x48 voxels, BW = 40KHz, in-plane FOV=25x25mm2 and 10mm slice thickness, NA=8) was used. Alternating back-to-back selective excitation was performed using 9ms excitation/flip-back RF pulses (α=90°) and 2ms adiabatic refocusing pulses (α=180°). All images were exported to DICOM format for OsiriX 7.0. T2 maps were created from the images acquired using the dual-echo sequence using the T2 fit map plugin

Results and Discussion

Figure 1 shows a T2 map in the lungs (T2 = 71 ± 23ms) which suggests the possibility of imaging the lungs with minimal blurring for scan times shorter than 100ms. Figure 2 shows a 48x48 carbon-13 scan with 0.5x0.5mm2 in-plane resolution (total scan time = 68ms). The mean SNR in the lungs was 68. Figure 3 shows dynamic imaging in another mouse with 5 seconds temporal resolution. The blurring at (t = 5s) may be due to a heart-beat coinciding with the scan, which can be resolved by using a cardiac-gated scan. Figure 4 shows the chemical shift images of the carbon phantom acquired with the frequency-selective version of sequence. For in vivo applications, the 9ms minimum phase RF pulse provides sufficiently sharp spectral selectivity (4ppm bandwidth at 9.4T) to image pyruvate and lactate in vivo as it can exclude the pyruvate-hydrate and alanine peaks. Each single-shot scan was 121ms, which is short enough to yield high resolution in vivo metabolic images of the lungs. It is notable that longer T2 relaxation times in tumors and other organs allows for forming much longer echo trains after the excitation, which can be used for high-resolution 3D chemical shift imaging with minimal blurring.

Conclusion

We showed the utility of a modified under-sampled single-shot TSE sequence for high resolution imaging of hyperpolarized carbon-13 agents the lungs with excellent signal quality. We further demonstrated the feasibility of extending this method to obtain high resolution chemical shift imaging via selective excitation.

Acknowledgements

No acknowledgement found.

References

[1] Beckmann N. et al. NMR Biomed., 14(5),297–306, (2001) [2] Hatabu H., et al. European Journal of Radiology, 29, (2), 152–159, (1999). [3] Ishii M., et al. Magn. Reson. Med., 57(3), 459–463, (2007).

Figures

Figure1. Estimated T2 Map of HP [1-13C]-pyruvate in the lungs using a dual-echo under-sampled single-shot TSE sequence. The right top and bottom images show the carbon maps for TE1 = 2.98ms and TE2 = 50.66ms.

Figure 2. (A) T2-weighted proton image, (B) carbon-13 image overlaid on the T2 image and (C) the grey scale carbon-13 image of the lungs.

Figure 3. Dynamic carbon-13 imaging of the lungs. t = 0s is the moment from the first image acquisition.

Figure 4. Demonstration of single chemical shift imaging using frequency-selective under-sampled single-shot TSE in (A) [1-13C]-glycine (173ppm) and (B) [1-13C]-sodium propionate (185ppm). Tubes 1 and 2 contain 1.5M of each compound and tube 3 contain a mixture. Images overlaid on a T2-weighted image.



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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