Compressed Sensing Accelerated MR Spectroscopic Imaging of Lactate
Rohini Vidya Shankar1, Shubhangi Agarwal1, and Vikram D Kodibagkar1

1Biomedical Engineering, Arizona State University, Tempe, AZ, United States

Synopsis

Lactate plays a key role in the development and progression of tumors and its spatial profile can be mapped using magnetic resonance spectroscopic imaging (MRSI). However, the long scan time involved in MRSI acquisitions is a deterrent to its inclusion in routine clinical protocols. A MRSI sequence containing lactate editing components combined with prospective compressed sensing acquisitions was developed for fast mapping of lactate metabolism, particularly in response to treatment. Results from in vivo experiments demonstrate a reduction in acquisition time by up to 80%, with the accelerated MRSI datasets maintaining high fidelity with the fully sampled reference dataset.

Introduction

Solid tumors have increased glucose uptake as compared to normal tissues, and preferentially metabolize glucose to lactate by anaerobic glycolysis. This phenomenon, known as the Warburg effect, is a less efficient pathway for ATP production and leads to elevated lactate levels in solid tumors1-2. Thus, lactate accumulation is a key indicator of tumor hypoxia and altered metabolism. Magnetic resonance spectroscopic imaging (MRSI) is a useful technique for imaging lactate metabolism in vivo, introducing the possibility of employing non-invasive lactate imaging as a powerful prognostic marker in the clinic. However, the long scan time associated with MRSI is a deterrent to its inclusion in current clinical protocols due to associated costs and patient discomfort. Acceleration strategies like compressed sensing (CS) permit faithful reconstructions even when the k-space is undersampled well below the established Nyquist limit3-4, and could potentially reduce the scan time in MRSI5. The objective of this study was to speed-up the acquisition of spectrally-edited MRSI using compressed sensing, for rapid imaging of the lactate resonance. CS-accelerated lactate maps were also acquired for tumor mice treated with the prodrug combretastatin A4 phosphate (CA4P)6, which rapidly disrupts and shuts down the tumor vasculature, to assess the changes in lactate metabolism in response to treatment.

Materials and Methods

MRSI experiments were conducted on a Bruker BioSpec 7T preclinical MRI scanner. A MRSI sequence containing spectral editing components for the selective excitation of lactate7 was developed in the ParaVision 5.1 environment. A built-in sampling mask enabled the pseudo-random undersampling of the k-space ‘on the fly’, facilitating CS acquisitions. The developed lactate-CS-MRSI sequence was tested on phantoms and in vivo in mice subcutaneously implanted with H1975 tumors in the right thigh. Baseline lactate CS-MRSI datasets were acquired (1X-5X) prior to administering CA4P (83 mg/kg body weight), and 24 hours following the injection of the prodrug. MRSI acquisition parameters – 16x16x2048 grid, TE/TR = 144/1500 ms, 4 mm slice thickness, 4 averages, FOV 3x3 cm2, total scan time for the 1X dataset = 25 min 36 s. Undersampled MRSI datasets were reconstructed offline in Matlab using an in-house reconstruction algorithm. The reconstruction was cast as a convex optimization problem, which involved minimizing the following cost function: ∥Fum−y∥2 + λL1∥Wm∥1 + λTVTV(m). Minimal post processing was applied to the reconstructed datasets in jMRUI8, namely apodization, phase correction, and removal of residual water. The generated lactate maps for various acceleration factors, both pre- and post-CA4P administration, were quantitatively compared with the reference 1X dataset on a voxel-by-voxel basis using metrics like the peak amplitude and SNR to assess the fidelity of the CS reconstructions.

Results and Discussion

Lactate was readily detected in the phantom and in tumor mice, with effective suppression of the water, fat, and other resonances by the lactate-CS-MRSI sequence. Figure 1(a) shows the MRSI pulse sequence incorporating lactate editing with pseudo-random undersampling of the phase encodes. Figure 1(b) depicts lactate maps in a tumor mouse for prospectively acquired CS-MRSI datasets 2X-5X. There were no statistically significant differences between the undersampled and reference reconstructions, except for the 4X case (p<0.05). Maps showing lactate metabolism in response to CA4P treatment are illustrated in Figure 2. A decrease in lactate levels was observed 24 hours after administration of CA4P, as measured by the lactate-CS-MRSI sequence (1X pre/post = 294.58/206.18 a.u. and 5X pre/post = 311.25/200.91 a.u., mean integrated intensity). Figure 3 depicts lactate maps from the administration of dextrose to a H1975 tumor mouse, which served as the control. As expected, no significant difference was found in the total lactate level over the tumor volume (1X pre/post = 278.39/263.07 a.u. and 5X pre/post =269.37/265.49 a.u.) 24 hours after dextrose injection. In both cases, CS reconstructions demonstrated high fidelity with the 1X dataset, both pre- and post CA4P therapy/dextrose administration.

Conclusion

The combination of spectral editing and CS undersampling enabled rapid mapping of the changes in lactate metabolism in response to therapy and otherwise. The undersampled reconstructions maintained fidelity with the 1X dataset. Clinical implementation of the lactate-CS-MRSI sequence is in progress, to facilitate fast non-invasive lactate imaging in cancer patients.

Acknowledgements

No acknowledgement found.

References

[1] Doherty et al, The Journal of Clinical Investigation, 2013; 123(9): 3685-3692. [2] Hirschhaeuser et al, Cancer Research, 2011; 71: 6921-6925. [3] Donoho, Information Theory, IEEE Transactions on, 2006; 52(4): 1289-1306. [4] Lustig et al, MRM, 2007; 58 (6): 1182-1195. [5] Geethanath et al, Radiology, 2012; 262 (3): 985-994. [6] Beauregard et al, British Journal of Cancer, 1998; 71(11): 1761-1767. [7] He et al, JMR, Series B 1995; 106: 203-211. [8] Naressi et al, Computers in Biology and Medicine, 2001; 31(4): 269-286.

Figures

Figure1 (a) Lactate-selective Sel-MQC7 sequence for 2D MRSI with compressed sensing based pseudo-random undersampling of the phase encodes. (b) Prospectively acquired reconstructed MRSI datasets showing the distribution of lactate in a H1975 tumor implanted subcutaneously in a mouse thigh for various accelerations 1X-5X.

Figure2 Lactate distribution as mapped by MRSI in a H1975 tumor in response to CA4P treatment. The top panel depicts lactate maps before CA4P injection for prospectively acquired CS data 1X, 2X, 5X. The lower panel depicts lactate distribution in the same tumor cross-section 24 hours post CA4P injection.

Figure3 Lactate distribution as mapped by MRSI in a H1975 tumor in response to injection of dextrose (control). The top panel depicts lactate maps before dextrose injection for prospectively acquired CS data 1X, 2X, 5X. The lower panel depicts lactate distribution in the same tumor cross section 24 hours post dextrose injection.

Figure4 The normalized RMSEs for the three datasets under consideration. (a) H1975 tumor mouse depicted in Figure 1(b), (b) H1975 tumor mouse treated with CA4P, and (c) H1975 tumor mouse injected with dextrose (control).



Proc. Intl. Soc. Mag. Reson. Med. 24 (2016)
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