Aline Seuwen1, Markus Wick2, Franek Hennel1, Aileen Schroeter1, and Markus Rudin1,3
1Institute for biomedical engineering, ETH & University of Zürich, Zürich, Switzerland, 2Bruker BioSpin MRI GmbH, Ettlingen, Germany, 3Institute for pharmacology and toxicology, University of Zürich, Zürich, Switzerland
Synopsis
In order to increase the volume coverage of 2D FID
based spectroscopic imaging in mice i.e. the
simultaneous measurement of several brain slices, we implemented a dynamic
shimming approach involving the separate optimization of first and second order
shim terms for volumes of interest in individual slices. When acquiring two
slices covering cortical and thalamic regions similar spectra
quality has been observed in both slices using dynamic shimming as compared to
measuring each slice individually. This allows simultaneous acquisition of metabolite
signal changes in several brain regions associated with stimulus evoked neural
activity upon sensory stimulation.Introduction
FID
based spectroscopic imaging (SI) provides full signal intensity and minimizes
chemical shift displacement errors for data acquired at high field [1]. Using this method, high spatial and
temporal resolution can be achieved (1ul voxel size, 12 min) enabling
functional metabolic measurements in mice using various stimulation paradigms
such as pharmacological or sensory stimulation [2, 3]. However, for such
measurements the shim gradients must be optimized on small volumes typically
not exceeding 40 µl on the mouse brain; this limits SI data acquisition to
typically one slice only. In order to increase the volume coverage i.e. allow
for the simultaneous measurement of several slices, we implemented a dynamic
shimming approach thereby optimizing the magnetic field homogeneity for each
slice individually, warranting the spectral quality required for accurate
analysis of fMRS data.
Method
All
experiments were carried out using a BioSpec 94/30, (AVIII HD, PV6.01, Bruker
BioSpin MRI GmbH, Ettlingen, Germany) small animal MR system operating at 400
MHz. A four-element receive-only cryogenic phased array coil (2x2 geometry,
overall coil size 20x27mm2) was used in combination with a linearly polarized
room temperature volume resonator for transmission. All in vivo experiments
were carried out in strict adherence with the Swiss law for animal protection. Mice
(N=3) were anesthetized using isoflurane (1.5%); intubated and artificially
ventilated with an oxygen/air (20% / 80%) mixture. Two axial slices were
selected comprising somatosensory cortex, striatal regions and ventricles in
the first slice and mainly thalamic and cortical regions in second slice. Optimal
first and second order shim terms were evaluated for a volume of 36 µl within each
slice separately prior to the experiment using field maps. The shim sets were
stored and updated for each slice in the pulse sequence together with the
corresponding working frequency. For SI, following parameters were used: TR:
2500ms; FOV: 1.5x1.5cm; matrix: 17x17; slice thickness: 1.3mm; acquisition
time: 12min. Scans were performed using VAPOR water suppression interleaved
with six saturation slices for outer volume suppression. SI scans were
repeatedly acquired, alternating baseline and stimulation periods. Stimulation
paradigm: 2mA, 5 Hz, 40s stimulation, 20s rest, 10 cycles (for a total duration
of 10 min). Relative quantification was performed using LCModel [4].
Results
The
volumes of interest (or shim volumes) and associated spectra extracted from a
cortical regions in the first slice and a thalamic region in the second slice
are displayed in Fig. 1. A line width of 10 Hz on average was achieved in both
spectra using dynamic shim updates (red line), while at least twice as large
values (22 Hz) were observed for spectra of the same locations when using a
static shim volume comprising both slices. This resulted in improved spectral
resolution and an SNR increase by a factor of two on average (Fig. 2A, B). In
general, similar spectra quality has been observed in both slices using dynamic
shimming compared to measuring each slice individually (data not shown).
Metabolites involved in general energy metabolism and neurotransmission such as
Glutamate (Glu), Glutamine (Gln), GABA and lactate (Lac) could be quantified
with Cramer-Rao lower bounds (CRLB) below 15% when using dynamic shimming,
while significantly larger CRLB values have been obtained when using a static
global shim (Fig. 3). Preliminary experiments revealed that upon electrical
stimulation of the right hind paw, increased levels of Lac and Glu where
measured in the left somatosensory cortex (Fig. 4A) as previously reported [3],
while no prominent changes have been found in thalamus (Fig. 4B).
Discussion
Metabolic
changes associated with stimulus evoked neural activity can be measured using
functional SI if the data quality is sufficient. Due to high demands on magnetic
field homogeneity, shim gradients are generally optimized in a single slice
restricting the volume coverage to few regions of interest. Implementing a
dynamic shim update approach allows larger brain coverage and therefore a
direct comparison of several brain regions involved in the processing of e.g. sensory
stimuli (e.g. thalamus and cortex). Metabolic changes upon stimulation when
acquiring spectra in a multi-slice experiment have been found comparable to
outcomes of previous studies using shim volumes restricted to a single slice in
combination with static shim procedures.
Acknowledgements
No acknowledgement found.References
[1] Henning et al, NMR Biomed.
2009;22(7):683-96. [2] Seuwen et al, Neuroimage neuroimage 2015; 07. 004 [3]
Seuwen et al, Proc.Intl. Soc. Mag. Reson. Med. 23, 2015, 1979 [4] Provencher
SW, Magn Reson Med 1993;30:672–679.