Michael Herbst1,2, Aditya Singh1, Benjamin Knowles2, Maxim Zaitsev2, and Thomas Ernst1
1JABSOM, University of Hawaii, Honolulu, HI, United States, 2Medical Physics, University Medical Center Freiburg, Freiburg, Germany
Synopsis
Prospective motion correction with external tracking was
applied to high resolution diffusion weighted imaging, using a phase-segmented
EPI readout strategy. To detect and correct for residual errors during
prospective motion correction, real-time volumetric registration provides
continuous feedback to the acquisition.Purpose
High resolution segmented diffusion weighted imaging (DWI)
can profit from prospective motion correction using external tracking (1).
However, the use of tracking markers may cause inadequate correction and even
additional motion artifacts. In this work, real-time volumetric registration
(PACE, 2) is used to detect and correct for residual errors during prospective
motion correction.
Methods
All experiments were conducted on a 3T Tim Trio Siemens
system. External tracking was performed using an in-bore camera system (Metria
Innovation Inc. Milwaukee, USA, 3) and provides the transformation matrix AXPACE.
The Siemens PACE algorithm provides real-time volumetric registration, and was
modified to provide feedback for scans without diffusion weighting only (transformation
matrix APACE, representing an error term). Position information from both sources was
combined (Afinal):
Afinal = AXPACE * APACE-1 [1]
This represents a re-initialization of the marker position
relative to the object.
A spin echo DWI sequence with segmented EPI readout was
modified as follows:
- External position information is used to
continuously update the imaging volume according to
the volunteer’s position.
- Multiple b = 0s/mm2 scans (b0) are
distributed evenly through the measurement.
- During the measurement, each b0-volume is
reconstructed and registered towards the first b0-volume.
- Relative position information from this
registration is applied in addition to external tracking data (as per Eq.[1]) to
update the orientation of subsequent scans in real-time. When a selected motion
threshold is detected by the volumetric registration (APACE), a
subset of the measurement is repeated.
- A maximal number of repetitions are enforced to
ensure acceptable scan duration.
While the b0
images can be reconstructed online, image reconstruction of the segmented
diffusion weighted data was performed offline using MUSE (4) to correct for
phase differences after diffusion weighting.
In addition to a higher signal to noise ratio, the segmentation of the
EPI readout has the advantage of substantially reducing distortions which is
beneficial for the PACE algorithm.
A phantom
experiment was conducted to display the new functionality. During the DWI
acquisition the phantom was first moved to a new position. Subsequently,
external tracking was altered by introducing position information from a second
marker, creating intentional position errors.
Three in vivo
acquisitions were performed:
a) No motion, for comparison
b) Motion, without correction
c) Motion, with the new combined prospective
correction
A custom
made mouthpiece was used for marker fixation. In addition to the head motion
performed in experiment (c), a volunteer was instructed to remove and put back
the mouthpiece in the middle of the acquisition to introduce a marker shift.
Sequence
parameters: TR/TE: 4000/77ms, matrix: 1282, 2 segments, PF 6/8, FOV:
192mm, 33 slices (2mm, 100% gap), DW: 1000s/mm2, 30 directions, 32
channel coil.
Results
Figure 1 a-d displays 4 time points of a single slice of the
b0 volume acquired during the phantom experiment. The first image (1a) shows
the phantom in the original position. In (1b) the phantom was moved manually.
This movement was prospectively corrected using data from the tracking system.
The movement of the small air bubble at the top of the phantom displays the
changing orientation. The third time-point (1c and c*) shows the acquired images
after switching tracking to the second marker, including the position offset introduced
(1c) and the volume re-aligned with PACE (1c*). In (1d) the prospective
correction data was adapted to the intentionally modified marker position (as
per Eq.[1]).
Figure 2 shows diffusion tensor data (color maps) acquired
during the in vivo experiments. Figure
2a shows the dataset without motion; in (2b) head movement leads to a substantial
loss in data quality. (2c) When the new combined prospective correction
approach is used, data quality can be restored despite the shift in marker
position.
Figure 3 shows the positional differences detected by the
PACE algorithm during the in vivo scan. The peak at the third time-point (1.5mm
and 0.5deg) indicates the removal of the mouthpiece.
Discussion and Conclusion
We demonstrate that intrinsic volumetric information can be
used to detect and correct errors in external tracking during prospective
correction of motion during DWI. Another potential application for the
combination of XPACE and PACE are fMRI time series. Of note, the limited
accuracy of PACE navigators seems to be sufficient to correct errors in the
relatively low resolution (>1.5mm) of routine DWI and fMRI scans. We will
further explore whether the method can be applied to high resolution structural
scans using other navigator methods.
Acknowledgements
This
project was supported by NIH (1R01-DA021146) and the
Alexander von Humboldt Foundation.References
1) Herbst
et al., Prospective Motion Correction of Segmented Diffusion Weighted EPI. MRM,
DOI 10.1002/mrm.25547, early view.
2) Thesen et al., Prospective acquisition correction for head motion with
image-based tracking for real-time fMRI. MRM 44(3),456-465,2000.
3) Maclaren et al., Measurement and Correction of
Microscopic Head Motion during MRI of the Brain. PLoS ONE 2012;7(11):e48088
4) Chen
et al., A robust multi-shot scan strategy for high-resolution diffusion
weighted MRI enabled by multiplexed sensitivity-encoding (MUSE). Neuroimage
2013;72:41–47.