Thomas Richard Barrick1, Andrew Mott1, Diggory North1, and Franklyn Arron Howe1
1Neuroscience Research Centre, St George's, University of London, London, United Kingdom
Synopsis
This study aims to optimise diffusion-weighted
MRI (DW-MRI) acquisition for applications involving the continuous time random
walk (CTRW) diffusion model. Minimum acquisition time and effects of inversion recovery
are considered. Optimisation indicates a 6 minute 4 b-value DW-MRI
acquisition is sufficient for diffusion tensor data. Inversion recovery
significantly reduces the variability in calculated α, β and ADC due to effects
of CSF in grey matter and periventricular white matter. Analysis of water
diffusion in brain with the CTRW model may reveal more subtle effects of
neuronal damage than conventional DWI.Purpose
The continuous time random walk (CTRW)
diffusion model provides an alternative technique for investigation
of water diffusion dynamics from diffusion-weighted magnetic resonance imaging
(DW-MRI) data.1 CTRW differs from the standard random walk model by
inclusion of probability density functions for spin waiting times and step
lengths. These are included as fractional waiting time, α, and step length, β,
exponents as follows,
$$ S_b=S_0\sum_{k=1}^\infty \frac{(-D\bar\Delta^\alpha q^\beta)^k}{\Gamma(\alpha k+1)} $$
where $$$\bar\Delta=\triangle-\delta/3$$$, q=γgδ and D is the apparent diffusion coefficient (ADC).
Diffusion kurtosis, k, and entropy, H, of the decay curve may be computed from
fitted model parameters2 for use in clinical imaging biomarker
studies. This study aims to optimise the diffusion-weighted MRI (DW-MRI)
acquisition to be within clinically acceptable time and to consider the effects
of inversion recovery (IR) to null CSF.3
Methods
MRI acquisition: Data were acquired at 3T using a single
shot EPI DW-MRI acquisition (TE=90ms, TR=6000ms, in-plane resolution 1.5mm2,
slice thickness 5mm) in 6 non-collinear diffusion directions on 6 healthy
volunteers (mean age 22±4.5 years). Optimisation: A “gold standard” acquisition was obtained
with 14 diffusion-sensitised images equally spaced between b=0 and 5000 s mm-2
(δ=23.5ms, Δ=43.9ms). Inversion recovery: DW-MRI (δ=22.8ms, Δ=44.6ms) were acquired
with IR (TI = 1801ms) and without IR, with b=0, 500, 750, 1000, 1500, 2250,
3500, and 5000 s mm-2.
Image Analysis: The CTRW model was fitted to each voxel and diffusion
direction. Entropy maps were computed to provide a measure of information
content of fitted decay curves1. Tensor maps were computed4 to create mean
eigenvalue maps for individual parameters. Tissue probability maps were
generated from T1-weighted images (1mm3 resolution)5 and binary tissue
segmentations created to calculate CTRW parameter values in grey and white
matter. Permutation analyses with 7, 6, 5 and 4
b-values were performed to optimise similarity between voxel α values in white matter for different b-value
combinations compared to the “gold-standard”, using sum of squared difference. Differences between median grey and white
matter parameters were assessed using paired t-tests.
Results
Parameter maps and tissue histograms for α, β and H are shown in Figures 1 and 2 for the
gold standard compared to the optimal minimum acquisition time of 5.8 mins (4
b-values, b=360, 1080, 4680, 5000 s mm
-2). No significant
differences for α, β and H in grey matter, or α and H in white matter were found between
the optimised 4 b-value acquisition and the gold standard. Significant
differences were found for β (p=0.002) in white
matter.
Parameter maps and tissue histograms for ADC, α, β and H are shown in Figures 3 and 4. IR reduced the skew of grey-matter ADC. For
specific brain regions there were significant differences in deep grey-matter (ADC
p<0.001; H p<0.001) and peri-ventricular white matter (ADC p=0.002; α p<0.001; β p<0.001) between IR and non-IR data.
Discussion and Conclusions
Image acquisition time was minimised while maintaining maximal
similarity of parameter maps to the gold standard by a 4 b-value dataset that
may be acquired within 5.8 minutes. This represents a clinically acceptable
acquisition time for use in patient studies. Furthermore, the majority of
parameters were not significantly different to the gold standard. Differences between
β parameters in white matter may be due to application
of a parameter optimisation on white matter alone.
Results of the IR study show that CSF partial volume effects at the
boundary between CSF and grey and white matter significantly affect parameter
values. Effects of CSF contamination are unlikely to be an effect of the
applied diffusion model and are particularly apparent in ADC measurements. IR DW-MRI is particularly useful for more accurate assessment of grey matter diffusion properties.
Future optimisation of data acquisition will simultaneously consider α and β
computed from IR DW-MRI in both grey and white matter to ensure optimisation
across all tissue types and parameters.
To show the potential utility of coupling the 4 b-value optimised
acquisition with IR DW-MRI an example is illustrated for a suspected gliomatosis cerebri
patient in Figure 5. The CTRW parameters, particularly anisotropy of α, provide greater tissue contrast than
conventional FLAIR, ADC or fractional anisotropy images, potentially revealing extensive, diffuse
abnormalities throughout the frontal lobe.
Acknowledgements
No acknowledgement found.References
[1] Ingo et al. Magn Reson Med 71(2):617-27; 2014.
[2] Ingo et al. Entropy 16:5838-5852; 2014.
[3] Yang et al. J Magn Reson Imaging 37: 365–371; 2013.
[4] Hall and Barrick. NMR Biomed. 25(2):286-94; 2012.
[5]
Ashburner and Friston. Neuroimage, 26(3):839-851; 2005