Gisela E Hagberg1,2, Jonas Bause1, Thomas Ethofer2,3, Philipp Ehses1, Thomas Dresler3, G Shajan1, Rolf Pohmann1, Cornelia Herbert3, Andreas Fallgatter3, Christoph Laske3, Marina Pavlova2, and Klaus Scheffler1,2
1High Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tübingen, Germany, 2Biomedical Magnetic Resonance, University Hospital Tübingen, Tübingen, Germany, 3General Psychiatry&Psychotherapy, University Hospital Tübingen, Tübingen, Germany
Synopsis
Accurate and precise determination of T1 values is of central importance in clinical studies and for
tissue segmentation based on the myeloarchitecture that transcends T1. Here we
investigate whether well-described age-dependent changes can be detected by
high field T1 relaxometry, and how different transmit field correction methods
influence the results. We found that the intrinsic bias correction of the
MP2RAGE technique is not sufficient to achieve reliable quantification of T1 at
ultra high magnetic fields. But, provided that a correction for transmit field inhomogeneity
is performed, T1 maps that consistently reveal age-related changes can be
generated. The technique holds promise for investigation of local
myeloarchitectonics for neuroscientific and clinical studies.Introduction
Accurate and precise determination of T1 values
is of central importance in clinical studies and for tissue segmentation
based on the myeloarchitecture that transcends T1 [1]. However, image
segmentation based on MP2RAGE [2,3] may be hampered by a non-uniform transmit
field, especially at 9.4T [4]. Correction for read-out and inversion efficiency,
based on T2 dependent variation, enables generation of synthetic images with
improved properties for image segmentation [4]. Here we investigate whether well-described
age-dependent changes [5] can be detected by high field T1 relaxometry, and how
different correction methods influence the results.
Materials & Methods
(21-56y N=25, 6 females), who volunteered to
participate in the ERB approved, were scanned at 9.4T (Siemens Germany), with a
16ch transmit/31ch receive array [6]. The transmit field was mapped with the Actual
Flip Angle method [7] and T1 with the MP2RAGE sequence (TI1/TI2=900/3500ms;
FA=4/6°; read-out TR =6ms; inversion TR=8894ms, 0.8mm isotropic voxel size). T1
calculations was performed pixel wise in three ways: A: without any corrections;
B: correction for the actual read-out flip angle only; C: correction for
transmit field dependent variation of read-out and inversion efficiency
assuming a T2 of 38ms. Synthetic MP2RAGE contrast images were used for tissue
segmentation in SPM12, and DARTEL based adaptation of the AAL brain atlas [8]
to native space. Uncorrected and corrected T1 values, as well as flip angle
scaling factors, as indicators of the uniformity of the transmit field, were
extracted for each individual in the 116 brain regions inside voxels with a
grey matter probability ≥0.5 (ROI). Linear regression analysis of the
age-dependent variation in T1 was performed and ROIs with p<0.001
(Bonferroni corrected for multiple comparisons) were considered significant.
Results & Discussion
The actual flip angle averaged within ROIs varied
between 20%-165% of the prescribed angle (Fig 1, top row) so the intrinsic bias
correction of the MP2RAGE method failed in brain regions with the highest transmit
field deviations, leading to altered T1 values in corresponding areas (middle
row, blue line). The actual transmit field correction of the read-out (middle
row, green line) lead to decreased T1
values, that were further normalized by correction for variations in the inversion
efficiency (red line). The coefficient-of-variation for T1 across subjects
decreased across the methods and allowed a more reliable detection of
age-related changes in T1. For the linear regression approach, an increasing
number of ROIs for which significance was reached, N, was observed across the
methods, with N=11, 47 and 61 for methods A, B, and C respectively. In the
latter 61 ROIs, the annual decrease in T1 time was -2.6ms±1.7 (A); -3.6ms±0.8
(B); and -4.6ms±0.7 (C), respectively. Assuming that the age-related changes
depend solely on iron accumulation [5], we found an average in vivo, r1
relaxivity of iron of 4.2±0.8 s-1/mg iron/ g wet weight tissue in
cortical areas.
Conclusions
The intrinsic bias correction of the MP2RAGE
technique is not sufficient to achieve reliable quantification of T1 at ultra
high magnetic fields. But, provided that a correction for transmit field inhomogeneity
is performed, T1 maps that consistently reveal age-related changes can be
generated. The technique holds promise for investigation of local
myeloarchitectonics for neuroscientific and clinical studies.
Acknowledgements
No acknowledgement found.References
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