Synopsis
In the Fourier transform-based susceptibility-to-B0
calculation, the dipolar field kernel (1/3-kz2/k2) is discretely sampled in
the k-space, which leads to aliasing artifacts in the spatial domain. We show
that calculating and discretizing the dipolar field kernel in the spatial
domain, before the Fourier transform, can effectively reduce the aliasing
effect without resorting to large zero-filled buffers. In particular, aliasing
is eliminated if the spatial-domain grid size is larger than the combined
dimensions of the susceptibility source and the B0 target regions. The new
method can accelerate repeated calculations of susceptibility-induced B0
fields.Introduction
Tissue magnetic susceptibility (
χ)-induced
B0 disturbances can be rapidly calculated by carrying out
convolution of the susceptibility map with the dipolar field kernel in the
Fourier domain [1,2]. Conventionally, the continuous
k-space dipolar field
kernel ($$$1/3-k_{z}^2/k^2$$$) is discretized in the
k-space, causing Fourier aliasing
artifacts in the spatial domain. This effect decreases, but is not eliminated,
with zero-filled buffers [2] added in the spatial domain. Whereas a moderate
buffer size is often sufficient for brain applications, disproportionately
larger buffer sizes may be required in other body parts where the susceptibility
source has a non-spherical, flat or elongated shape. Large buffers burden the computational
memory and can slow down repeated
χ-to-
B0 calculations as in certain
quantitative susceptibility mapping (QSM) algorithms [3]. Here we show that
discretization of the dipolar field kernel in the spatial domain provides an
effective way to avoid aliasing. The process utilizes closed-form integration of
the dipolar field over a rectangular volume. It can be shown that for any
bounded object, buffering by a factor of two in each Cartesian direction
guarantees lack of aliasing.
Theory
Figure 1 illustrates the concept
of our method. The true, continuous dipolar field kernel (Fig. 1a)
is contaminated when the kernel is discretized in the Fourier domain by the
replicas of the dipole sources appearing at integer multiples of the domain
size (L) (Fig. 1b). The effect is generally non-zero everywhere in the spatial domain
due to the long range of the aliased dipolar fields. In contrast, if the true
dipolar field is first discretized and truncated in the spatial domain, the subsequent
(discrete) Fourier transform leads to aliasing which does not affect the true
dipolar field in the original domain (L) (Fig. 1c). If this kernel is
convoluted with the susceptibility of a source object with length Lobj, the
aliased portion of the kernel does not affect the true field inside the object when
$$$L\geq 2L_{obj}$$$.
Now consider a 3D Cartesian grid
where each voxel is a rectangular cuboid of volume $$${\Delta}v={\Delta}x{\times}{\Delta}y{\times}{\Delta}z$$$.
The susceptibility-induced, z-directional magnetic field in the ith voxel is given by the discrete convolution:
$$\delta B_0(\vec{r}_i)=\sum_{\vec{r}_j}K(\vec{r}_i-\vec{r}_j)\cdot\chi(\vec{r}_j)$$
where K is the average
dipolar field in the ith (target) voxel per unit susceptibility of the jth
(source) voxel. In computing K for anisotropic voxels, it is
important that the dipolar field be averaged over the target
voxel rather than merely sampled at its center. The voxel-averaged dipolar field
kernel K can be analytically calculated using the formula in Fig. 2. This
kernel is then Fourier-transformed discretely, multiplied by the Fourier
transform of χ, and inverse-transformed to give the off-resonance field,
$$\delta B_0 = FT^{-1}(FT(K)\cdot FT(\chi)).$$
As long as the spatial domain is
at least twice as large as the region of interest (in all Cartesian
directions), δB0 is free from aliasing artifacts. If the source and
target regions are different, a domain size that equals the sum of the sizes of
the source and the target regions (in all directions) is sufficient to avoid artifacts.
Method and Results
Numerical simulation was
conducted in Matlab (Mathworks, MA, USA) on an ellipsoid with axis lengths =(0.4,
0.2, 0.8)[m] in a Cartesian grid with voxel size 2x2x4 [mm
3]. The
ellipsoid was uniformly magnetized at 3T with
χ = 1 ppm.
δB0 was
calculated using both the proposed and the conventional methods with 3 different
buffer dimensions in the shortest-axis (
y) direction to assess the aliasing
artifacts. Figure 3 shows the simulation models and results. For the two small buffers
(a,b), the conventional method exhibited a large mismatch between the simulated
and the analytical [4] δ
B0 profiles. The proposed method, on the contrary,
showed excellent agreement in all cases. In particular, the proposed method was
free from artifacts on the coronal mid-plane (
y=0) without any buffer in the
y-direction
(case (a)). Figure 4 compares the computation times. The proposed method is
slower in calculation of the
k-space dipolar kernel (Step 1). However, this is
compensated by faster subsequent calculations (Step 2) resulting from the
smaller domain size afforded by the new method.
Discussion
The proposed method adds one more
operation in computing the Fourier-domain dipolar field kernel compared to the
conventional method, but this is needed only once for a given computational
grid. After that, reduction of the computational memory and guaranteed
elimination of the Fourier aliasing effect can improve the speed and accuracy
of repeated susceptibility-to-
B0 calculations. Potential applications include
respiration-induced
B0 changes in the brain [2], susceptibility-induced off-resonance
calculation in the body, including breast [5], and iterative high-resolution QSM
outside the brain.
Acknowledgements
No acknowledgement found.References
[1] Salomir R. el al, Concepts
Magn Reson 19B:26 (2003). [2] Marques J.P. and Bowtell R., Concepts Magn Reson
25B:65 (2005). [3] de Rochefort L. et al, Magn Reson Med 63:194 (2010). [4]
Osborn, J.A., Phys Rev 67:351 (1945). [5] Lee S-K. and Hancu I., J Magn Reson
Imaging 36:873 (2012).