Gregory Lemberskiy1, Steven H. Baete1, Martijn A. Cloos1, Dmitry S. Novikov1, and Els Fieremans1
1Radiology, NYU School of Medicine, New York, NY, United States
Synopsis
This work represents the first measurement of S/V on a
clinical scanner using OGSE on a well-characterized anisotropic fiber phantom.
The S/V measurement is validated externally via non-diffusion metrics (Spin
Echo and MR Fingerprinting). Lastly, a comparison of $$$D(\omega)$$$ and $$$D(t)$$$ shows that the effective diffusion time is $$$t_{\rm eff}^{\rm Mitra} = 9/64f =
9/16\cdot t_{\rm eff}$$$ rather than the commonly used $$$t_{\rm eff} =
1/4f$$$. Purpose
Surface-to-Volume ratio (S/V) quantification from the
asymptotic short time (Mitra) limit1 is essential for disentangling
free diffusivity $$$D_0$$$ from restrictions to diffusion. Conventional Pulsed Gradient Spin Echo (PGSE) measurements fail
to probe the Mitra limit on clinical MRI scanners due to limited gradient strength. Oscillating Gradient Spin Echo (OGSE) remedies this problem by increasing
diffusion weighting and therefore shortening the diffusion time. The success of
OGSE led to multiple in-vivo studies for tissue characterization.
2,3,4 While the Mitra limit was recently
demonstrated in a mouse glioma model
2, none of the human
measurements have been shown to be in the Mitra limit. Here we validate the S/V
quantification using $$$D(\omega)$$$ in four fiber bundles with a range of
known S/V values,
and demonstrate the first instance of achieving the
Mitra limit5 on a clinical 3T scanner.
Methods
Theory: The analytic form of the Mitra limit in
the frequency domain, $$$D(\omega)$$$, was recently derived2
$$D(t)=D_0\left(1-\frac4{3d\sqrt{\pi}}\frac{S}{V}\sqrt{D_0t}\right)\leftrightarrow\text{}D(\omega)=D_0\left(1-\frac1{d\sqrt{2}}\frac{S}{V}\sqrt{D_0\over\omega}\right)(1)$$
Although the conventional identification
of “effective diffusion time” is $$$t_{\rm eff}=1/4f$$$,
where $$$f=2\pi\omega$$$, matching $$$D(\omega)$$$ and $$$D(t)$$$ is model
dependent6. Understanding this, we can derive the effective diffusion time within the mitra limit: $$$t_{\rm
eff}^{\rm Mitra}=9/64f=9/16\cdot t_{\rm eff}$$$.
Here we neglect small
corrections from finite number N of oscillations7 as our N ranges between 4 and 44,
which is chosen by maximizing N for each $$$t_{eff}$$$.
Phantom: Four bundles, consisting of Dyneema fibers ($$$2r=17\mu\text{m}$$$
diameter) are held tightly together by a shrinking tube, are created according to the method described in [8]. The total fiber count in
each bundle is varied (50, 75, 100, 110 turns, respectively) to create
different fiber densities. The contrast
in fiber density in each bundle manifests into a difference in water
fraction, $$$\phi$$$, and S/V. With a quantitative measurement of proton
density (PD) and knowledge of the fiber radius, S/V can be estimated via:
$$\frac{S}{V}=\frac{2}{r}\bigg(\frac{1-\phi}{\phi}\bigg)\textrm{
where
}\phi=\frac{PD_{Fiber}}{PD_{Water}}\textrm{ }(2)$$Spin Echo (SE) and Plug-and-Play MR
Fingerprinting (PnP-MRF)9 are used to calculate PD maps [Fig.1(C-D)]. To account for B1 non-uniformity in SE N3
bias field correction10 from
FreeSurfer is applied. Unlike the original MRF methodology11, PnP-MRF9 is a radial
fingerprinting approach that separates out the B1+ from the, PD, T2, and T1 maps.
For each modality, the water fraction in each bundle is calculated based on
the PD maps by the ratio of a fiber ROI inside the bundle and water ROI in
close proximity to the bundle, in order to account for residual receive
sensitivity variations.
OGSE and PG-STEAM: Measurements were performed on a MAGNETOM
3T PRISMA system (Siemens AG, Erlangen, Germany) with a 20-channel head coil.
Measurement parameters are summarized in [Table.1]. A stretched cosine gradient11 [Fig.2(A)] with $$$\alpha=2$$$ is implemented for increased b-value while
suppressing zero-frequency lobes Fig.2(B)]. Pulsed Gradient diffusion using
STEAM EPI (WIP511E) is also acquired to examine diffusion behavior at long t
in comparison to OGSE. DTI metrics are generated using in-house software
written in MATLAB. S/V is calculated by fitting Eq(1) to the perpendicular
diffusivity, derived as the average of $$$\lambda_2$$$ and $$$\lambda_3$$$.
The linear regime as a function of $$$1/\sqrt{\omega}$$$ is determined by selecting the range for which the
$$$D_0$$$ will converge to the median of the non-dispersive $$$\lambda_1(\omega)$$$ [black
dashed line [Fig.3]].
Results & Discussion
Increasing the number of fibers within the bundle
results in denser fiber bundles with a corresponding lower diffusion
coefficient, higher FA, and decreased water fraction [Fig.1]. With increasing fiber density,
the Mitra limit is achieved in a shorter range of frequencies [Fig.3], as
evidenced by the linear dependence of D on $$$1/\sqrt{\omega}$$$. S/V estimates
derived from SE and PnP-MRF showed strong correlation
($$$\rho_{PnPMRF}=0.9951$$$ and $$$\rho_{SE}=0.9943$$$) with S/V estimates from
OGSE. Particularly, the PnP-MRF derived S/V is in near exact agreement with the
OGSE derived S/V [Fig.4]. The better agreement with PNP-MRF is explained by the
more precise estimation of PD of this method
9. Furthermore, the
correspondence between PGSE (STEAM) and OGSE [Fig.1] when using $$$t_{\rm
eff}^{\rm Mitra}=9/16\cdot\text{}t_{\rm eff}$$$, suggests that for the
short-time limit (only), the extra factor of 9/16 is appropriate.
Conclusions
Here we introduce a well-characterized fiber
phantom that can be used for the calibration of OGSE and diffusion modeling
techniques as the S/V ratio can be measured independently using other MR
modalities such as PnP-MRF. Furthermore, as the measurement parameters are within a clinically
acceptable range, this calibration experiment offers an exciting perspective of
mapping S/V in humans. This is of particular interest in body diffusion applications where the sizes of restrictions match or even exceed those of the fibers in our phantom.
Acknowledgements
Jerzy Walczyk for making the phantom.References
1. Mitra et al., Phys Rev B 1993; 47:8565–8574
2.
Reynaud et al., MRM. doi: 10.1002/mrm.25865
3. Baron,
and Beaulieu., MRM (2014), 72: 726–736.
4. Xu et al.
Neuroimage., (2014), 103:10-9
5. Novikov et al., JMR (2011), 210:141–145.
6. Novikov et al., NMR Biomed (2010) 23(7):682-97.
7. Sukstanskii et al., JMR (2013), 234:135–140
8. Fieremans et al. Phys.Med.Biol.(2008),
53:5405
9. Cloos et al., ISMRM (2015) p695.
10. Sled et al. IEEE TMI (1998) 17:87–97
11. Ma, et al., Nature, (2013);479:187-192.
12. Ligneul et al., ISMRM (2015) p616.