Da Zou1, Ruibo Song1, Dong Han1, and Feng Huang1
1Neusoft Medical Systems, Shenyang, China
Synopsis
The
conventional multi-shot diffusion weighted imaging (DWI) techniques, such as
MUSE, have not been widely adopted clinically due to long scan time. In this
study, an accelerated multi-shot DWI method based on deep learning is proposed.
By learning a fully convolutional neural network to enhance DWI images, more structural
details and less noise can be achieved, especially when with fewer shots or NSA
(Number of Signal Average), in the meantime the reconstruction time can be reduced
by over 200 times. It means the proposed approach reduces the scan and
reconstruction time dramatically while keeping high quality of the images,
which makes it a potential technique for high resolution multi-shot DWI in
routine clinical study.
INTRODUCTION
Diffusion
weighted imaging (DWI) is a promising technique for investigating the
microscopic properties of tissues. Single-shot DWI is currently the most widely
accepted approach mainly due to its insensitiveness to motion and easy
implementation. However, it inherently suffers from low resolution, low SNR and
geometric distortions. To address these challenges, multi-shot DWI techniques, such
as MUSE 1, were employed, but it increases scan and reconstruction time
significantly. In this study, a deep-learning-based multi-shot DWI method is
proposed, which is able to achieve high image quality with fewer acquisitions
and reduce reconstruction time dramatically, thus making fast and high resolution
DWI feasible.METHODS
We
proposed a fast multi-shot DWI method using the generative adversarial network
(GAN), which consisted of a generator and a discriminator (see Fig. 1). The
architecture of the generator was based on UNet 2 with skip
connections, which learned a non-linear mapping between from respectively
reconstructed one-shot DWI images and multi-shot DWI ground truth. The
discriminator adopted a CNN-based classification network to differentiate the reconstructed
images from the ground truth. Experiments were conducted on a 1.5T MR system
(NSM S15P, Neusoft Medical Systems, China). The brain DWI dataset, consisting
of 30 subjects, was acquired using 4-shot interleaved EPI sequence with TR/TE=4200/107ms,
slice thickness=5mm, slice number=22, matrix size=192*192, FOV=230mm*230mm and
3 diffusion directions at b=1000s/mm2. The coil sensitivity information
was obtained by the reference scan using GRE sequence. In the training process,
Multi-shot DWI with NSA=4 (Number of Signal Average) was served as ground truth,
which was combined with parallel imaging method. Data augmentation was
implemented before feeding into the network to improve robustness. The loss
function was a combination of the weighted sum of pixel-wise Mean-Square-Error
(MSE) loss and the adversarial loss, which preserved texture and sharpness of
edges. The Adam optimization algorithm was adopted with momentum of 0.5 and the
initial learning rate of 0.0001 was halved every 10 epochs.
RESULTS
Visual comparison of the results from the proposed method (upper row) and
MUSE (lower row) are shown in Fig.2. A series of experiments were conducted
with different number of acquisitions, from 2 shots, NSA=1 to 4 shots, NSA=2. As
can be clearly seen that, compared to MUSE, the results from the proposed
method consistently have more details and less noise, especially when with
fewer shots or NSA. Figure 3 shows the quantitative comparison between the two
methods in terms of structural similarity index (SSIM), where the result from
the proposed method with 4 shots, NSA=1 is numerically close to the result from
MUSE with 4 shots, NSA=2 (0.918 vs. 0.924), which means 50% scan time can be reduced
with approximately the same image quality. Additionally, the reconstruction
time of the proposed method is less than 100ms, which is over 200 times faster
than that of 4-shots MUSE.
DISCUSSION
Benefited from the powerful image enhancement capability of deep neural
network, our proposed method achieves higher image quality level than single
shot DWI. In the meantime, the risk of motion artifacts can be reduced due to
the shorter scan time, compared with conventional multi-shot DWI methods.
Furthermore, the proposed method has the potential to obtain even better
results with more sophisticated ground truth, which can be generated by
averaging over more acquisitions or using enhanced reconstruction methods 3.CONCLUSION
In this work, an accelerated
multi-shot DWI approach using deep learning is proposed, which reduces the scan
and reconstruction time dramatically while keeping high quality of the images.
Our proposed method can make multi-shot DWI more clinically acceptable.
Acknowledgements
No acknowledgement found.References
1. Chen N K, Guidon A, Chang H C, et al. A robust multi-shot scan strategy for high-resolution diffusion weighted MRI enabled by multiplexed sensitivity-encoding (MUSE). Neuroimage, 2013, 72(2):41-47.
2. Ronneberger O, Fischer P, Brox T. U-Net: Convolutional Networks for Biomedical Image Segmentation. 2017, 9351:234-241.
3. Zhang Z, Huang F, Ma X, et al. Self-feeding MUSE: a robust method for high resolution diffusion imaging using interleaved EPI. Neuroimage, 2015, 105(105):552-560.