Jonathan Doucette1,2, Laura Kim1,2, Enedino Hernández-Torres1,3, Friedrich Anastasopoulos4, Christian Kames1,2, and Alexander Rauscher1,3,5
1UBC MRI Research Centre, Vancouver, BC, Canada, 2Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada, 3Pediatrics, University of British Columbia, Vancouver, BC, Canada, 4Physics and Astronomy, Heidelberg University, Heidelberg, Germany, 5Division of Neurology, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada
Synopsis
Using
vascular parameters obtained from dynamic susceptibility contrast
MRI, the gradient echo and spin echo
blood
oxygenation level dependent
(BOLD) signals were simulated at 3
and 7T in order to investigate the effects of tissue orientation and
perivascular spaces. We show that both the magnitude and the
tissue orientation dependence of the BOLD effect is amplified by perivascular spaces.
Introduction
BOLD
fMRI detects neural activity via changes in blood oxygenation. Most
fMRI studies focus on the brain’s gray matter (GM), but there are
also reports on white matter (WM)1-3. Previously, the effects of
tissue orientation on the BOLD signal have been described for
cortical GM; in cortical folds parallel to the main magnetic field,
the gradient echo (GRE) BOLD signal was shown to be 40% higher
compared to folds perpendicular to the main magnetic field4. Recent
research using dynamic susceptibility contrast (DSC) MRI demonstrated
that the vasculature in WM is highly anisotropic5,6. Moreover,
perivascular spaces (PVS) surround larger blood vessels in the brain.
These PVS are two to three times the diameter of the containing
vessel, and are often enlarged in pathological conditions and
aging7,8. Recent work demonstrated that the free water in
perivascular spaces significantly affects DTI measures9, suggesting
that the fluid within the perivascular spaces cannot be neglected in
BOLD fMRI. Here, we perform numerical simulations of the GRE and the
spin echo (SE) BOLD signal at 3 and 7T in order to explore the
influence of PVS and tissue orientation.Methods
Simulation
of the BOLD effect which accounts for diffusion effects requires
solving the Bloch-Torrey equation, which describes the SE or GRE
signal time evolution, within a simulated WM voxel filled with
anisotropic and isotropic blood vessels. The construction of the
voxel geometry, calculation of the local field inhomogeneities, and
solving of the Bloch-Torrey equation is described in our previous
work6.
The
vascular architecture resulted from a parameter fitting
process6 (Figure 1). This geometry is used as the input for a
forward calculation of the BOLD signal at a range of echo times and
tissue orientations for both GRE and SE at 3 and 7T. The simulations
were performed without and with a perivascular space of twice the
anisotropic vessel radius. The diffusivity within the perivascular
space and the blood was set to that of water, $$$3037\mu{m}^2/ms$$$.
The diffusivity within the surrounding tissue was set to
$$$1000\mu{m}^2/ms$$$.
Venous blood oxygenation was assumed as $$$Y=0.61$$$
at baseline and $$$Y=0.73$$$
at activation10, resulting in susceptibility differences of 0.39ppm
and 0.27ppm
at rest and activation, respectively. The magnetic field within the
voxel was then calculated by convolution of the susceptibility distribution with a magnetic unit dipole
(Figure 1). $$$T_2$$$ relaxation times at [3T,7T] were [33.3ms,14.1ms]
for venous blood at baseline and [49.7ms,21.9ms] at activation,
[1790ms,1010ms] for PVS fluid, and [69.0ms,45.9ms]
for WM.
Results and Discussion
Both
the SE BOLD signal's magnitude and orientation dependence, which are
mediated by diffusion near blood vessels, are amplified by PVS.
Figures 2 and 3 show the relative BOLD signal as a function of
orientation and echo time with and without perivascular space at 7T
and 3T, respectively. The GRE BOLD effect, which is dominated by
static dephasing, shows considerable orientation dependence of up to
150% at both field strengths (Figures 2 and 3). For the SE signal at
7T with PVS, diffusion around the larger vessels has no relevant
influence until echo times (i.e. diffusion times) of about 30ms.
Until then, the BOLD signal is dominated by smaller vessels with no
preferred orientation. At 3T, where the field gradients around the
vessels are weaker, relevant orientation effects in the SE BOLD
signal with PVS start to appear at 70ms. Without PVS at both 3 and
7T, orientation effects are small. The SE BOLD signal peaks later
than the GRE BOLD signal, which is expected since it requires
diffusion within the field inhomogeneities. Furthermore, the relative
(i.e. not scaled for field strength) SE BOLD signal is almost the
same at 3 and 7T, which is due to the reduced $$$T_2$$$-times of tissue
at 7T, which attenuate the SE BOLD contrast. At 3T, orientation
dependence in the SE signal emerges at echo times beyond 60ms, which
are usually not employed in functional MRI. At 7T, on the other hand,
an orientation dependence of 20% to 40% of the BOLD signal is present
at echo times between 40ms and 60ms.
The
high diffusion coefficient and the long $$$T_2$$$ of the fluid within the
perivascular spaces act as amplifiers of the BOLD-effect’s
magnitude and orientation dependence. Due to the dramatic orientation
effects in the WM GRE BOLD signal, WM fMRI experiments may have to be
performed using SE methods, with echo times around 35ms at 7T and
60ms at 3T. Additionally, orientation dependence in the cortical
GM4 should vary between cortical layers due to systematic
intra-cortical differences in vessel architecture.
Acknowledgements
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