The precise structural connections between the amygdala, anterior temporal pole and insula remain poorly understood. These connections have been described with ex-vivo dissection, however the diffusion-based counterparts to these bundles haven’t been described in detail. In a recent study (currently under review) we investigated these connections with ex-vivo dissection on 11 brain specimens. We also explored the possibility of reconstructing the bundles found on dissection with Diffusion MRI. Here we demonstrate the results obtained for reconstructing these white matter connections using 20 randomly selected healthy participants of the HCP young adults data release.
The structure of white matter fibers connecting the amygdala, anterior temporal pole and the insular cortex is poorly studied. These white matter tracts have important clinical relevance due to their role in propagation of epileptic activity. Ex-vivo, Klingler and Gloor described the ‘fasciculus amygdaloinsularis’1 & recent studies investigated these connections in primates2.
However, it has not been specifically reported in-vivo in humans, this may be due to the abundance of fiber crossings within these regions and the small size of the involved structures and bundles, which poses a technical problem for typical diffusion tensor imaging (DTI) methods3.
Here we investigate the diffusion correlate to these white matter connections found on virtual dissection using an advanced preprocessing pipeline on high spatial and angular resolution diffusion data of normal volunteers (n=20) acquired from the Human Connectome Project young adults preprocessed data release (v3.19.0 – released 1/3/2017).
We used minimally preprocessed structural and diffusion images4 of the HCP young adults database acquired by the Washington University and University of Minnesota consortium5. Participants ages ranged between 22 – 35 years, demographics available at (https://db.humanconnectome.org/), 20 subjects were randomly selected as a preliminary sample.
Images were acquired on a Siemens 3T Skyra MRI scanner as previously detailed6. All images were preprocessed using the pipeline described by Glasser et al4, resulting in subject specific whole brain parcellation of the structural images using Freesurfer7, as well as diffusion weighted images which were denoised and corrected for gradient distortions as well as subject motion, eddy current artefacts and Echo planar imaging (EPI) distortions.
Each subject’s preprocessed T1, T2 weighted images and Freesurfer labels were warped to native diffusion space using ANTs8 and 5ttgen of Mrtrix39 was used to generate tissue probability maps. The diffusion data was processed using Mrtrix3. First, the preprocessed diffusion data was bias corrected using dwibiascorrect with ANTs N4 bias field correction10, followed by dwi2response and dwi2fod using the multi-shell multi-tissue framework11 to estimate tissue specific response functions and fiber orientation distributions (FOD). These FODs were then normalized for multiple tissues with mtnormalise. The individual T1s and corrected FODs were then used to generate population templates from the 20 participants with the population_template script of Mrtrix3. Whole brain tractography was done with FACT12 and with iFOD213, with anatomical constraint14 and dynamic seeding15 in both cases. We used tckedit to segment the whole brain tractograms using VOIs derived from the AAL atlas looking for streamlines connecting the insula, amygdala, and anterior temporal pole, constituting the amygdalo-insular (AIF) and temporo-insular (TIF) fiber bundles, respectively. Other VOIs (frontal and occipital) were used for the Uncinate and Inferior Fronto-occpital fasciculus (UF and IFOF).
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