REM-sleep-behavior-disorder (RBD) is characterized by the absence of muscle-atonia during REM-sleep. RBD is strongly associated with presymptomatic-manifestations of neurodegenerative-synucleinopathies. Thus, it allows the investigation of early/premanifest neurodegenerative-stages when treatment can be most effective in delaying the development of full-blown-disease. Changes in brainstem-nuclei-connectivity are expected in RBD/premanifest-synucleinopathy based on animal- and ex-vivo-human-studies. Yet, their investigation in living-humans is understudied. Through high-spatial-resolution 7Tesla-MRI and a recently-developed probabilistic-brainstem-nuclei-atlas, we built a brainstem-based structural-connectome in living RBD-patients and age-matched controls. Interestingly, in RBD-patients we detected structural-connectivity-changes within the brainstem, with the striatum and cerebellum in line with the pathophysiology of RBD in animal-models.
To investigate the presence of structural connectivity changes of brainstem nuclei in RBD by the use of high spatial-resolution diffusion-tensor-imaging (DTI) at 7 Tesla as well as a recently developed probabilistic structural atlas of brainstem nuclei of the arousal and motor systems in Montreal-Neurological-Institute (MNI) space [5-6].
Data acquisition: Five patients with idiopathic-RBD (age 69.6 ± 1.12) and two healthy subjects (age 64.5 ± 1.5) underwent 3 Tesla and 7 Tesla-MRI under IRB-approval. 7 Tesla spin-echo DTI: with parameters n. slices/diffusion-weighting gradients/echo-time/repetition-time/phase-encoding direction/bandwith/partial-Fourier/n. diffusion-directions/b-value: 82/unipolar/66.8 ms/7.4 s/“anterior/posterior”/“1456 Hz/pixel”/“6/8”/60/2500 s/mm2, seven interspersed “b0” images (T2-weighted, non-diffusion weighted, b-value = 0 s/mm2), acquisition-time: 8′53′′. To perform distortion-correction we also acquired seven “b0” images with opposite phase-encoding direction. To aid coregistration of DTI to MNI space, a 3 Tesla T1-weighted MEMPRAGE MRI was acquired with repetition-time/echo-times/inversions-time/flip-angle/field-of-view/matrix/bandwidth/GRAPPA-factor/acquisition-time: 2.51 s/[1.6, 3.5, 5.3, 7.2] ms/1.5 s/7°/256×256×176 mm3/256×256×176/“651 Hz/pixel”/2/6′34′′.
Data analysis: a) Preprocessing: We computed the root-mean-square MEMPRAGE image across echo-times, rotated it to standard-orientation (“RPI”), cropped the most inferior slices containing the spinal-cord (in order to aid its coregistration to MNI-space) and bias-field corrected it (SPM8); we then parcellated the resulting image with Freesurfer (7). DTIs were rotated to standard-orientation, de-noised (8), motion and distortion-corrected (FSL, topup/eddy). We then computed the diffusion tensor, tensor-invariants (e.g. fractional anisotropy, FA) and S0 (T2-weighted) image from the preprocessed DTI (FSL, dtifit). To map the Freesurfer parcellation to native DTI-space, we computed an affine boundary-based transformation (FSL, FLIRT-BBR) between the preprocessed MEMPRAGE image and single-subject S0 images. To map the brainstem nuclei atlas to native DTI-space, we computed the bivariate high-dimensional diffeomorphic transformations (ANTs) between IIT-MNI FA/S0 templates (9) and single-subject FA/S0 images. b) Definition of seed and target regions for DTI-based connectivity analysis: As seed regions, we used the structural probabilistic atlas labels [5-6] of eight brainstem nuclei relevant for premanifest synucleinopathy (Figure 1D) mapped from IIT-MNI-space to native-space (using the coregistration transformations explained above). As target regions, we used the probabilistic atlas labels of 16 brainstem nuclei of [5-6], as well as the 82 cortical/subcortical bilateral regions obtained in each subject from the MEMPRAGE Freesurfer-parcellation (mapped to native space as explained above). c) Single-subject DTI-based connectivity analysis: We performed deterministic tractography using MRtrix3. We propagated 10,000 streamlines from each seed-mask, and computed a “structural-connectivity-index” (range: [0 1]) for each pair of seed-target masks (= fraction of streamlines propagated from the seed reaching the target mask). d) Group DTI-based connectivity analysis: We averaged across subjects the structural-connectivity-index of brainstem nuclei with target-regions to yield a group structural connectome of these nuclei. We displayed this connectome using a 2D circular diagram [10]. e) As a validation of the DTI-based connectome obtained in controls, we derived a prediction model of expected structural-connectivity pathways of these nuclei based on animal literature [11-12].
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